Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS35Q96QK1 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS35Q96QK1 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
VPS35Q96QK1 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS35Q96QK1 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS35Q96QK1 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS35Q96QK1 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS35Q96QK1 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS35Q96QK1 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS35Q96QK1 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
VPS35Q96QK1 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20■□□□□ 0.79
VPS35Q96QK1 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
VPS35Q96QK1 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS35Q96QK1 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20■□□□□ 0.79
VPS35Q96QK1 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VPS35Q96QK1 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
VPS35Q96QK1 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
VPS35Q96QK1 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20■□□□□ 0.79
VPS35Q96QK1 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20■□□□□ 0.79
VPS35Q96QK1 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20■□□□□ 0.79
VPS35Q96QK1 AC060766.5-201ENST00000590539 871 ntBASIC20■□□□□ 0.79
VPS35Q96QK1 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS35Q96QK1 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VPS35Q96QK1 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS35Q96QK1 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS35Q96QK1 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS35Q96QK1 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS35Q96QK1 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
VPS35Q96QK1 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS35Q96QK1 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS35Q96QK1 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS35Q96QK1 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS35Q96QK1 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS35Q96QK1 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS35Q96QK1 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.99■□□□□ 0.79
VPS35Q96QK1 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS35Q96QK1 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.99■□□□□ 0.79
VPS35Q96QK1 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS35Q96QK1 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
VPS35Q96QK1 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.99■□□□□ 0.79
VPS35Q96QK1 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
VPS35Q96QK1 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS35Q96QK1 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS35Q96QK1 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.99■□□□□ 0.79
VPS35Q96QK1 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS35Q96QK1 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS35Q96QK1 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
VPS35Q96QK1 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.98■□□□□ 0.79
VPS35Q96QK1 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS35Q96QK1 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS35Q96QK1 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS35Q96QK1 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS35Q96QK1 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.98■□□□□ 0.79
VPS35Q96QK1 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.98■□□□□ 0.79
VPS35Q96QK1 AC023632.3-201ENST00000521633 145 ntBASIC19.98■□□□□ 0.79
VPS35Q96QK1 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.98■□□□□ 0.79
VPS35Q96QK1 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.98■□□□□ 0.79
VPS35Q96QK1 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.98■□□□□ 0.79
VPS35Q96QK1 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
VPS35Q96QK1 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.98■□□□□ 0.79
VPS35Q96QK1 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS35Q96QK1 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.98■□□□□ 0.79
VPS35Q96QK1 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
VPS35Q96QK1 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS35Q96QK1 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS35Q96QK1 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS35Q96QK1 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS35Q96QK1 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.97■□□□□ 0.79
VPS35Q96QK1 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS35Q96QK1 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS35Q96QK1 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
VPS35Q96QK1 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS35Q96QK1 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS35Q96QK1 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS35Q96QK1 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS35Q96QK1 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS35Q96QK1 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS35Q96QK1 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS35Q96QK1 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
VPS35Q96QK1 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS35Q96QK1 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS35Q96QK1 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS35Q96QK1 PTBP1P-201ENST00000554374 1601 ntBASIC19.97■□□□□ 0.79
VPS35Q96QK1 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS35Q96QK1 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS35Q96QK1 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS35Q96QK1 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
VPS35Q96QK1 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS35Q96QK1 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
VPS35Q96QK1 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS35Q96QK1 AC020907.5-201ENST00000624372 1936 ntBASIC19.96■□□□□ 0.79
VPS35Q96QK1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS35Q96QK1 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS35Q96QK1 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS35Q96QK1 FEM1AP1-201ENST00000431297 1995 ntBASIC19.96■□□□□ 0.79
VPS35Q96QK1 AP005212.1-201ENST00000581547 1997 ntBASIC19.96■□□□□ 0.79
VPS35Q96QK1 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS35Q96QK1 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS35Q96QK1 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
VPS35Q96QK1 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms