Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19■□□□□ 0.63
PTCHD1Q96NR3 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19■□□□□ 0.63
PTCHD1Q96NR3 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19■□□□□ 0.63
PTCHD1Q96NR3 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19■□□□□ 0.63
PTCHD1Q96NR3 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
PTCHD1Q96NR3 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 BID-203ENST00000399765 1879 ntTSL 2 BASIC19■□□□□ 0.63
PTCHD1Q96NR3 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19■□□□□ 0.63
PTCHD1Q96NR3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
PTCHD1Q96NR3 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
PTCHD1Q96NR3 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19■□□□□ 0.63
PTCHD1Q96NR3 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD1Q96NR3 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 HLA-B-256ENST00000639848 1089 ntBASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD1Q96NR3 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 AC060766.5-201ENST00000590539 871 ntBASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 AC092368.3-202ENST00000574180 1591 ntBASIC18.98■□□□□ 0.63
PTCHD1Q96NR3 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTCHD1Q96NR3 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTCHD1Q96NR3 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms