Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AP006294.2-201ENST00000641667 209 ntBASIC6.2□□□□□ -1.42
SYNE1Q8NF91 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 BX088651.1-201ENST00000540551 451 ntBASIC6.2□□□□□ -1.42
SYNE1Q8NF91 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 KRT18P68-201ENST00000392293 1000 ntBASIC6.19□□□□□ -1.42
SYNE1Q8NF91 THEM4-205ENST00000489410 643 ntTSL 2 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 MOK-233ENST00000524214 1539 ntTSL 2 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 GATS-209ENST00000454084 1030 ntTSL 3 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 AC133561.5-201ENST00000635547 218 ntBASIC6.19□□□□□ -1.42
SYNE1Q8NF91 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 CYP21A1P-202ENST00000354927 1481 ntBASIC6.19□□□□□ -1.42
SYNE1Q8NF91 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 AL591742.1-201ENST00000604433 565 ntBASIC6.19□□□□□ -1.42
SYNE1Q8NF91 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 KLF2-202ENST00000592003 564 ntTSL 3 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC6.19□□□□□ -1.42
SYNE1Q8NF91 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SYNE1Q8NF91 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms