Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 LTF-203ENST00000426532 2494 ntTSL 2 BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 AC009113.1-201ENST00000570267 2443 ntBASIC12.65□□□□□ -0.38
LINC00643Q86TS7 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC12.65□□□□□ -0.39
LINC00643Q86TS7 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
LINC00643Q86TS7 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC12.65□□□□□ -0.39
LINC00643Q86TS7 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
LINC00643Q86TS7 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 LINC01465-201ENST00000408887 1940 ntBASIC12.64□□□□□ -0.39
LINC00643Q86TS7 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00643Q86TS7 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LINC00643Q86TS7 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms