Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF111Q6ZNA4 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.56■□□□□ 0.72
RNF111Q6ZNA4 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
RNF111Q6ZNA4 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
RNF111Q6ZNA4 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF111Q6ZNA4 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RNF111Q6ZNA4 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
RNF111Q6ZNA4 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 AC061975.6-201ENST00000579045 1553 ntBASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 KRT18P11-201ENST00000435214 1283 ntBASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.54■□□□□ 0.72
RNF111Q6ZNA4 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 UBE2DNL-204ENST00000602536 740 ntBASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
RNF111Q6ZNA4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 NEFHP1-201ENST00000412845 2629 ntBASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF111Q6ZNA4 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
RNF111Q6ZNA4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
RNF111Q6ZNA4 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.51■□□□□ 0.71
RNF111Q6ZNA4 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.51■□□□□ 0.71
RNF111Q6ZNA4 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNF111Q6ZNA4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.51■□□□□ 0.71
RNF111Q6ZNA4 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNF111Q6ZNA4 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNF111Q6ZNA4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.51■□□□□ 0.71
RNF111Q6ZNA4 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNF111Q6ZNA4 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms