Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
PPP4R4Q6NUP7 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PPP4R4Q6NUP7 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PPP4R4Q6NUP7 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
PPP4R4Q6NUP7 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PPP4R4Q6NUP7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.27■□□□□ 0.67
PPP4R4Q6NUP7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PPP4R4Q6NUP7 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.27■□□□□ 0.67
PPP4R4Q6NUP7 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PPP4R4Q6NUP7 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
PPP4R4Q6NUP7 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PPP4R4Q6NUP7 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 AP000974.1-201ENST00000623909 2387 ntBASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 DUX4L2-201ENST00000561772 1275 ntBASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 DUX4L6-201ENST00000626483 1275 ntBASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 DUX4L1-201ENST00000627662 1275 ntBASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 DUX4L8-201ENST00000629013 1275 ntBASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 DUX4L3-201ENST00000630187 1275 ntBASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 DUX4L7-201ENST00000630678 1275 ntBASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 DUX4L5-201ENST00000630834 1275 ntBASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
PPP4R4Q6NUP7 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 TNXA-203ENST00000507684 2038 ntBASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PPP4R4Q6NUP7 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 AC079140.4-201ENST00000507448 529 ntBASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 TPRG1LP1-201ENST00000598702 760 ntBASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 AC009237.3-201ENST00000393279 1427 ntBASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPP4R4Q6NUP7 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 TERF1P2-201ENST00000583350 1212 ntBASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 AC092666.2-201ENST00000613287 246 ntBASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PPP4R4Q6NUP7 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 9.7 ms