Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 CYP21A1P-202ENST00000354927 1481 ntBASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 AC087633.2-202ENST00000565166 1439 ntBASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 AL162412.1-201ENST00000567129 965 ntBASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 PLLP-204ENST00000569059 665 ntTSL 3 BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 AL356652.1-201ENST00000615962 565 ntBASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 AC011767.1-201ENST00000617410 1153 ntBASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC22.18■■□□□ 1.14
CCDC40Q4G0X9 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 AC006015.1-201ENST00000429970 570 ntBASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 DUX4L16-201ENST00000555130 1264 ntBASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 AIRN-201ENST00000601203 4374 ntBASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CCDC40Q4G0X9 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 ME3-201ENST00000323418 1068 ntTSL 5 BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC22.16■■□□□ 1.14
CCDC40Q4G0X9 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 STX6-204ENST00000542060 4809 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.15■■□□□ 1.14
CCDC40Q4G0X9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC22.14■■□□□ 1.14
CCDC40Q4G0X9 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC40Q4G0X9 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC22.14■■□□□ 1.14
CCDC40Q4G0X9 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.14
CCDC40Q4G0X9 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.14
CCDC40Q4G0X9 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 CNN2P6-201ENST00000439038 900 ntBASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 BID-214ENST00000617586 542 ntTSL 5 BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC22.14■■□□□ 1.13
CCDC40Q4G0X9 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC40Q4G0X9 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
CCDC40Q4G0X9 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
CCDC40Q4G0X9 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC22.13■■□□□ 1.13
CCDC40Q4G0X9 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CCDC40Q4G0X9 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC22.13■■□□□ 1.13
CCDC40Q4G0X9 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC22.13■■□□□ 1.13
CCDC40Q4G0X9 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC22.13■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms