Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC24.87■■□□□ 1.57
CCDC88AQ3V6T2 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC24.86■■□□□ 1.57
CCDC88AQ3V6T2 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
CCDC88AQ3V6T2 MIR1238-201ENST00000408483 83 ntBASIC24.86■■□□□ 1.57
CCDC88AQ3V6T2 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC24.86■■□□□ 1.57
CCDC88AQ3V6T2 FDX2-207ENST00000494368 584 ntTSL 4 BASIC24.86■■□□□ 1.57
CCDC88AQ3V6T2 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC24.86■■□□□ 1.57
CCDC88AQ3V6T2 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC24.86■■□□□ 1.57
CCDC88AQ3V6T2 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
CCDC88AQ3V6T2 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
CCDC88AQ3V6T2 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC24.85■■□□□ 1.57
CCDC88AQ3V6T2 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC88AQ3V6T2 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC88AQ3V6T2 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
CCDC88AQ3V6T2 MYB-221ENST00000527615 2381 ntTSL 5 BASIC24.85■■□□□ 1.57
CCDC88AQ3V6T2 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC24.85■■□□□ 1.57
CCDC88AQ3V6T2 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC24.85■■□□□ 1.57
CCDC88AQ3V6T2 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC24.85■■□□□ 1.57
CCDC88AQ3V6T2 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC24.85■■□□□ 1.57
CCDC88AQ3V6T2 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC24.85■■□□□ 1.57
CCDC88AQ3V6T2 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC24.85■■□□□ 1.57
CCDC88AQ3V6T2 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC88AQ3V6T2 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC24.84■■□□□ 1.57
CCDC88AQ3V6T2 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC88AQ3V6T2 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC88AQ3V6T2 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC24.83■■□□□ 1.57
CCDC88AQ3V6T2 AC104076.2-201ENST00000448912 469 ntBASIC24.83■■□□□ 1.57
CCDC88AQ3V6T2 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC88AQ3V6T2 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC24.83■■□□□ 1.57
CCDC88AQ3V6T2 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
CCDC88AQ3V6T2 Z98882.1-201ENST00000622160 2253 ntBASIC24.83■■□□□ 1.57
CCDC88AQ3V6T2 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
CCDC88AQ3V6T2 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.56
CCDC88AQ3V6T2 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
CCDC88AQ3V6T2 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.56
CCDC88AQ3V6T2 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC24.83■■□□□ 1.56
CCDC88AQ3V6T2 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC24.83■■□□□ 1.56
CCDC88AQ3V6T2 AL121894.2-201ENST00000602977 491 ntBASIC24.83■■□□□ 1.56
CCDC88AQ3V6T2 AC005363.2-201ENST00000618631 242 ntBASIC24.83■■□□□ 1.56
CCDC88AQ3V6T2 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
CCDC88AQ3V6T2 KRT18P22-201ENST00000402024 1347 ntBASIC24.83■■□□□ 1.56
CCDC88AQ3V6T2 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 AC022616.7-201ENST00000525383 220 ntBASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 AC073195.1-201ENST00000607241 877 ntBASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 KRT16P1-201ENST00000399124 1418 ntBASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC88AQ3V6T2 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 NMU-205ENST00000511469 756 ntTSL 3 BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC88AQ3V6T2 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
CCDC88AQ3V6T2 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms