Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC12.64□□□□□ -0.39
HSPG2P98160 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC12.64□□□□□ -0.39
HSPG2P98160 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC12.64□□□□□ -0.39
HSPG2P98160 AL445675.2-201ENST00000620291 557 ntBASIC12.64□□□□□ -0.39
HSPG2P98160 AC011558.1-201ENST00000623459 338 ntBASIC12.64□□□□□ -0.39
HSPG2P98160 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HSPG2P98160 AC008040.2-201ENST00000461049 708 ntBASIC12.63□□□□□ -0.39
HSPG2P98160 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC12.63□□□□□ -0.39
HSPG2P98160 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC12.63□□□□□ -0.39
HSPG2P98160 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 PCED1CP-201ENST00000419887 785 ntBASIC12.63□□□□□ -0.39
HSPG2P98160 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC12.63□□□□□ -0.39
HSPG2P98160 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC12.63□□□□□ -0.39
HSPG2P98160 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC12.63□□□□□ -0.39
HSPG2P98160 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC12.63□□□□□ -0.39
HSPG2P98160 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC12.63□□□□□ -0.39
HSPG2P98160 AL031985.4-201ENST00000642138 673 ntBASIC12.63□□□□□ -0.39
HSPG2P98160 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
HSPG2P98160 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HSPG2P98160 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC12.62□□□□□ -0.39
HSPG2P98160 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC12.62□□□□□ -0.39
HSPG2P98160 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC12.62□□□□□ -0.39
HSPG2P98160 RN7SL510P-201ENST00000581311 263 ntBASIC12.62□□□□□ -0.39
HSPG2P98160 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC12.62□□□□□ -0.39
HSPG2P98160 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC12.62□□□□□ -0.39
HSPG2P98160 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC12.62□□□□□ -0.39
HSPG2P98160 CD70-202ENST00000423145 881 ntTSL 2 BASIC12.62□□□□□ -0.39
HSPG2P98160 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 AC139530.3-201ENST00000620344 690 ntBASIC12.62□□□□□ -0.39
HSPG2P98160 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
HSPG2P98160 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC12.62□□□□□ -0.39
HSPG2P98160 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC12.62□□□□□ -0.39
HSPG2P98160 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC12.62□□□□□ -0.39
HSPG2P98160 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC12.62□□□□□ -0.39
HSPG2P98160 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
HSPG2P98160 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC12.62□□□□□ -0.39
HSPG2P98160 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC12.62□□□□□ -0.39
HSPG2P98160 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC12.62□□□□□ -0.39
HSPG2P98160 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HSPG2P98160 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HSPG2P98160 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HSPG2P98160 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC12.61□□□□□ -0.39
HSPG2P98160 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
HSPG2P98160 AL671277.2-201ENST00000458060 996 ntBASIC12.61□□□□□ -0.39
HSPG2P98160 FDX2-206ENST00000492239 773 ntTSL 2 BASIC12.61□□□□□ -0.39
HSPG2P98160 AL356652.1-201ENST00000615962 565 ntBASIC12.61□□□□□ -0.39
HSPG2P98160 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HSPG2P98160 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC12.61□□□□□ -0.39
HSPG2P98160 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC12.61□□□□□ -0.39
HSPG2P98160 AC012313.10-201ENST00000623509 926 ntBASIC12.61□□□□□ -0.39
HSPG2P98160 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HSPG2P98160 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HSPG2P98160 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC12.61□□□□□ -0.39
HSPG2P98160 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
HSPG2P98160 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HSPG2P98160 KRT17P6-201ENST00000453795 1220 ntBASIC12.61□□□□□ -0.39
HSPG2P98160 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HSPG2P98160 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HSPG2P98160 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
HSPG2P98160 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
HSPG2P98160 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC12.61□□□□□ -0.39
HSPG2P98160 STK25-205ENST00000405883 1904 ntTSL 2 BASIC12.61□□□□□ -0.39
HSPG2P98160 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HSPG2P98160 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HSPG2P98160 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms