Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
PKNOX1P55347 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
PKNOX1P55347 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
PKNOX1P55347 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
PKNOX1P55347 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.73■□□□□ 0.75
PKNOX1P55347 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
PKNOX1P55347 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PKNOX1P55347 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PKNOX1P55347 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.73■□□□□ 0.75
PKNOX1P55347 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PKNOX1P55347 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.73■□□□□ 0.75
PKNOX1P55347 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.73■□□□□ 0.75
PKNOX1P55347 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PKNOX1P55347 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.73■□□□□ 0.75
PKNOX1P55347 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PKNOX1P55347 FAM21FP-204ENST00000608637 956 ntBASIC19.73■□□□□ 0.75
PKNOX1P55347 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.73■□□□□ 0.75
PKNOX1P55347 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.73■□□□□ 0.75
PKNOX1P55347 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.73■□□□□ 0.75
PKNOX1P55347 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.73■□□□□ 0.75
PKNOX1P55347 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.73■□□□□ 0.75
PKNOX1P55347 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PKNOX1P55347 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PKNOX1P55347 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.73■□□□□ 0.75
PKNOX1P55347 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PKNOX1P55347 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PKNOX1P55347 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PKNOX1P55347 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PKNOX1P55347 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PKNOX1P55347 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
PKNOX1P55347 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PKNOX1P55347 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PKNOX1P55347 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PKNOX1P55347 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PKNOX1P55347 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.72■□□□□ 0.75
PKNOX1P55347 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.72■□□□□ 0.75
PKNOX1P55347 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.72■□□□□ 0.75
PKNOX1P55347 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
PKNOX1P55347 CDV3P1-201ENST00000471403 739 ntBASIC19.72■□□□□ 0.75
PKNOX1P55347 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.72■□□□□ 0.75
PKNOX1P55347 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PKNOX1P55347 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
PKNOX1P55347 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
PKNOX1P55347 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
PKNOX1P55347 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.71■□□□□ 0.75
PKNOX1P55347 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 TCF3P1-201ENST00000423021 1937 ntBASIC19.71■□□□□ 0.75
PKNOX1P55347 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.71■□□□□ 0.75
PKNOX1P55347 AC116562.4-201ENST00000641316 2276 ntBASIC19.71■□□□□ 0.75
PKNOX1P55347 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.71■□□□□ 0.75
PKNOX1P55347 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.71■□□□□ 0.75
PKNOX1P55347 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
PKNOX1P55347 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.71■□□□□ 0.75
PKNOX1P55347 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
PKNOX1P55347 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
PKNOX1P55347 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.71■□□□□ 0.75
PKNOX1P55347 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PKNOX1P55347 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.7■□□□□ 0.74
PKNOX1P55347 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
PKNOX1P55347 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
PKNOX1P55347 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 ZNRF2P3-201ENST00000424200 374 ntBASIC19.7■□□□□ 0.74
PKNOX1P55347 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.7■□□□□ 0.74
PKNOX1P55347 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.7■□□□□ 0.74
PKNOX1P55347 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.7■□□□□ 0.74
PKNOX1P55347 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.7■□□□□ 0.74
PKNOX1P55347 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PKNOX1P55347 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PKNOX1P55347 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.69■□□□□ 0.74
PKNOX1P55347 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
PKNOX1P55347 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PKNOX1P55347 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PKNOX1P55347 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms