Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.97
LIG3P49916 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIG3P49916 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIG3P49916 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
LIG3P49916 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LIG3P49916 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.08■□□□□ 0.97
LIG3P49916 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.08■□□□□ 0.97
LIG3P49916 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
LIG3P49916 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LIG3P49916 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LIG3P49916 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
LIG3P49916 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.08■□□□□ 0.96
LIG3P49916 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
LIG3P49916 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.96
LIG3P49916 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.07■□□□□ 0.96
LIG3P49916 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.07■□□□□ 0.96
LIG3P49916 POU5F1P4-201ENST00000413175 1085 ntBASIC21.07■□□□□ 0.96
LIG3P49916 AC026185.1-201ENST00000445748 174 ntBASIC21.07■□□□□ 0.96
LIG3P49916 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.07■□□□□ 0.96
LIG3P49916 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.07■□□□□ 0.96
LIG3P49916 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.07■□□□□ 0.96
LIG3P49916 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
LIG3P49916 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.07■□□□□ 0.96
LIG3P49916 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.07■□□□□ 0.96
LIG3P49916 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIG3P49916 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.06■□□□□ 0.96
LIG3P49916 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LIG3P49916 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
LIG3P49916 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIG3P49916 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIG3P49916 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIG3P49916 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
LIG3P49916 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC21.06■□□□□ 0.96
LIG3P49916 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIG3P49916 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIG3P49916 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.06■□□□□ 0.96
LIG3P49916 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LIG3P49916 DUX4L16-201ENST00000555130 1264 ntBASIC21.06■□□□□ 0.96
LIG3P49916 SLC7A5P1-201ENST00000568957 537 ntBASIC21.06■□□□□ 0.96
LIG3P49916 AC120498.10-201ENST00000621827 505 ntBASIC21.06■□□□□ 0.96
LIG3P49916 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIG3P49916 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.06■□□□□ 0.96
LIG3P49916 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.06■□□□□ 0.96
LIG3P49916 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.06■□□□□ 0.96
LIG3P49916 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LIG3P49916 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
LIG3P49916 AC061975.6-201ENST00000579045 1553 ntBASIC21.06■□□□□ 0.96
LIG3P49916 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIG3P49916 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIG3P49916 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LIG3P49916 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIG3P49916 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIG3P49916 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.05■□□□□ 0.96
LIG3P49916 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
LIG3P49916 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
LIG3P49916 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LIG3P49916 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
LIG3P49916 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIG3P49916 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.05■□□□□ 0.96
LIG3P49916 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIG3P49916 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
LIG3P49916 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.04■□□□□ 0.96
LIG3P49916 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.04■□□□□ 0.96
LIG3P49916 AC010536.3-201ENST00000620306 533 ntBASIC21.04■□□□□ 0.96
LIG3P49916 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIG3P49916 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
LIG3P49916 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIG3P49916 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
LIG3P49916 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIG3P49916 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
LIG3P49916 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LIG3P49916 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LIG3P49916 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LIG3P49916 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIG3P49916 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.04■□□□□ 0.96
LIG3P49916 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LIG3P49916 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIG3P49916 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
LIG3P49916 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIG3P49916 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
LIG3P49916 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.03■□□□□ 0.96
LIG3P49916 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms