Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFC3P40938 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.46■□□□□ 0.55
RFC3P40938 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.46■□□□□ 0.55
RFC3P40938 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFC3P40938 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFC3P40938 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
RFC3P40938 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
RFC3P40938 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.45■□□□□ 0.54
RFC3P40938 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.45■□□□□ 0.54
RFC3P40938 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFC3P40938 AC027702.1-201ENST00000563810 1770 ntBASIC18.45■□□□□ 0.54
RFC3P40938 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFC3P40938 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFC3P40938 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFC3P40938 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFC3P40938 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RFC3P40938 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
RFC3P40938 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFC3P40938 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFC3P40938 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFC3P40938 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.45■□□□□ 0.54
RFC3P40938 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
RFC3P40938 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.45■□□□□ 0.54
RFC3P40938 AC069544.1-201ENST00000609399 999 ntBASIC18.45■□□□□ 0.54
RFC3P40938 AL359736.2-201ENST00000621992 437 ntBASIC18.45■□□□□ 0.54
RFC3P40938 AP006294.2-201ENST00000641667 209 ntBASIC18.45■□□□□ 0.54
RFC3P40938 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.45■□□□□ 0.54
RFC3P40938 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFC3P40938 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.45■□□□□ 0.54
RFC3P40938 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
RFC3P40938 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RFC3P40938 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RFC3P40938 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RFC3P40938 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.44■□□□□ 0.54
RFC3P40938 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.44■□□□□ 0.54
RFC3P40938 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
RFC3P40938 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RFC3P40938 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
RFC3P40938 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.44■□□□□ 0.54
RFC3P40938 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RFC3P40938 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RFC3P40938 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.44■□□□□ 0.54
RFC3P40938 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.44■□□□□ 0.54
RFC3P40938 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.44■□□□□ 0.54
RFC3P40938 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.44■□□□□ 0.54
RFC3P40938 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.44■□□□□ 0.54
RFC3P40938 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.44■□□□□ 0.54
RFC3P40938 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RFC3P40938 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RFC3P40938 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.44■□□□□ 0.54
RFC3P40938 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RFC3P40938 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
RFC3P40938 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
RFC3P40938 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.44■□□□□ 0.54
RFC3P40938 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RFC3P40938 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RFC3P40938 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RFC3P40938 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.44■□□□□ 0.54
RFC3P40938 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.44■□□□□ 0.54
RFC3P40938 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
RFC3P40938 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
RFC3P40938 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RFC3P40938 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RFC3P40938 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
RFC3P40938 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.43■□□□□ 0.54
RFC3P40938 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.43■□□□□ 0.54
RFC3P40938 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.43■□□□□ 0.54
RFC3P40938 RPPH1-201ENST00000516869 333 ntBASIC18.43■□□□□ 0.54
RFC3P40938 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.43■□□□□ 0.54
RFC3P40938 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
RFC3P40938 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.43■□□□□ 0.54
RFC3P40938 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
RFC3P40938 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
RFC3P40938 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RFC3P40938 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.43■□□□□ 0.54
RFC3P40938 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RFC3P40938 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RFC3P40938 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
RFC3P40938 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RFC3P40938 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.43■□□□□ 0.54
RFC3P40938 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.43■□□□□ 0.54
RFC3P40938 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
RFC3P40938 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RFC3P40938 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
RFC3P40938 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
RFC3P40938 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RFC3P40938 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.42■□□□□ 0.54
RFC3P40938 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.42■□□□□ 0.54
RFC3P40938 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFC3P40938 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.42■□□□□ 0.54
RFC3P40938 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.42■□□□□ 0.54
RFC3P40938 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.42■□□□□ 0.54
RFC3P40938 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFC3P40938 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RFC3P40938 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFC3P40938 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.42■□□□□ 0.54
RFC3P40938 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.42■□□□□ 0.54
RFC3P40938 POM121L13P-201ENST00000422362 380 ntBASIC18.42■□□□□ 0.54
RFC3P40938 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RFC3P40938 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms