Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC1P18887 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC1P18887 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC1P18887 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.08■□□□□ 0.81
XRCC1P18887 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.08■□□□□ 0.81
XRCC1P18887 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
XRCC1P18887 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC1P18887 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
XRCC1P18887 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
XRCC1P18887 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.08■□□□□ 0.81
XRCC1P18887 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
XRCC1P18887 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
XRCC1P18887 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.08■□□□□ 0.8
XRCC1P18887 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.08■□□□□ 0.8
XRCC1P18887 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.08■□□□□ 0.8
XRCC1P18887 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
XRCC1P18887 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
XRCC1P18887 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
XRCC1P18887 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
XRCC1P18887 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
XRCC1P18887 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC1P18887 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
XRCC1P18887 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
XRCC1P18887 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
XRCC1P18887 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC1P18887 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.07■□□□□ 0.8
XRCC1P18887 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.07■□□□□ 0.8
XRCC1P18887 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC1P18887 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC1P18887 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC1P18887 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.07■□□□□ 0.8
XRCC1P18887 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.07■□□□□ 0.8
XRCC1P18887 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.07■□□□□ 0.8
XRCC1P18887 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC1P18887 CD99P1-205ENST00000527459 561 ntBASIC20.07■□□□□ 0.8
XRCC1P18887 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.07■□□□□ 0.8
XRCC1P18887 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.07■□□□□ 0.8
XRCC1P18887 CYP2T3P-201ENST00000601990 817 ntBASIC20.07■□□□□ 0.8
XRCC1P18887 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.07■□□□□ 0.8
XRCC1P18887 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC1P18887 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC1P18887 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC1P18887 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
XRCC1P18887 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC1P18887 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC1P18887 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC1P18887 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
XRCC1P18887 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC1P18887 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC1P18887 PLK5-205ENST00000642079 1969 ntBASIC20.06■□□□□ 0.8
XRCC1P18887 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC1P18887 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC1P18887 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.06■□□□□ 0.8
XRCC1P18887 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC1P18887 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC1P18887 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
XRCC1P18887 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.06■□□□□ 0.8
XRCC1P18887 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.06■□□□□ 0.8
XRCC1P18887 LSM12P1-201ENST00000411836 588 ntBASIC20.06■□□□□ 0.8
XRCC1P18887 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
XRCC1P18887 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC1P18887 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.06■□□□□ 0.8
XRCC1P18887 AC097658.1-201ENST00000475555 843 ntBASIC20.06■□□□□ 0.8
XRCC1P18887 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.06■□□□□ 0.8
XRCC1P18887 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.06■□□□□ 0.8
XRCC1P18887 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.06■□□□□ 0.8
XRCC1P18887 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC1P18887 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
XRCC1P18887 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.06■□□□□ 0.8
XRCC1P18887 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC1P18887 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC1P18887 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC1P18887 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
XRCC1P18887 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
XRCC1P18887 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
XRCC1P18887 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.06■□□□□ 0.8
XRCC1P18887 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC1P18887 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.05■□□□□ 0.8
XRCC1P18887 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC1P18887 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.05■□□□□ 0.8
XRCC1P18887 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC1P18887 AL355472.2-201ENST00000422958 438 ntBASIC20.05■□□□□ 0.8
XRCC1P18887 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
XRCC1P18887 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.05■□□□□ 0.8
XRCC1P18887 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.05■□□□□ 0.8
XRCC1P18887 AC091874.3-201ENST00000512672 1195 ntBASIC20.05■□□□□ 0.8
XRCC1P18887 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.05■□□□□ 0.8
XRCC1P18887 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.05■□□□□ 0.8
XRCC1P18887 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
XRCC1P18887 MYC-209ENST00000641252 345 ntBASIC20.05■□□□□ 0.8
XRCC1P18887 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC1P18887 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC1P18887 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.05■□□□□ 0.8
XRCC1P18887 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC1P18887 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC1P18887 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
XRCC1P18887 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
XRCC1P18887 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
XRCC1P18887 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.04■□□□□ 0.8
XRCC1P18887 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms