Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.28■■□□□ 1
COL6A3P12111 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
COL6A3P12111 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
COL6A3P12111 AC116050.2-201ENST00000612102 1779 ntBASIC21.28■■□□□ 1
COL6A3P12111 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.28■■□□□ 1
COL6A3P12111 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL6A3P12111 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.28■■□□□ 1
COL6A3P12111 AC245052.3-201ENST00000450182 901 ntBASIC21.28■■□□□ 1
COL6A3P12111 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.28■■□□□ 1
COL6A3P12111 EMBP1-201ENST00000458200 901 ntBASIC21.28■■□□□ 1
COL6A3P12111 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
COL6A3P12111 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.28■■□□□ 1
COL6A3P12111 AL031008.1-201ENST00000619963 541 ntBASIC21.28■■□□□ 1
COL6A3P12111 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL6A3P12111 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL6A3P12111 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC21.27■■□□□ 1
COL6A3P12111 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL6A3P12111 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL6A3P12111 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL6A3P12111 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.27■□□□□ 0.99
COL6A3P12111 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL6A3P12111 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.26■□□□□ 0.99
COL6A3P12111 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC21.26■□□□□ 0.99
COL6A3P12111 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.26■□□□□ 0.99
COL6A3P12111 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL6A3P12111 NPAP1P7-201ENST00000613027 823 ntBASIC21.26■□□□□ 0.99
COL6A3P12111 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL6A3P12111 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL6A3P12111 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL6A3P12111 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL6A3P12111 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL6A3P12111 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL6A3P12111 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL6A3P12111 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.25■□□□□ 0.99
COL6A3P12111 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.25■□□□□ 0.99
COL6A3P12111 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL6A3P12111 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL6A3P12111 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL6A3P12111 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL6A3P12111 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.25■□□□□ 0.99
COL6A3P12111 AC092119.3-201ENST00000612618 583 ntBASIC21.25■□□□□ 0.99
COL6A3P12111 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.25■□□□□ 0.99
COL6A3P12111 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL6A3P12111 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL6A3P12111 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL6A3P12111 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.25■□□□□ 0.99
COL6A3P12111 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
COL6A3P12111 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC21.25■□□□□ 0.99
COL6A3P12111 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
COL6A3P12111 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL6A3P12111 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL6A3P12111 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.24■□□□□ 0.99
COL6A3P12111 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL6A3P12111 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
COL6A3P12111 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL6A3P12111 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL6A3P12111 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
COL6A3P12111 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
COL6A3P12111 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
COL6A3P12111 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.24■□□□□ 0.99
COL6A3P12111 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.24■□□□□ 0.99
COL6A3P12111 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC21.24■□□□□ 0.99
COL6A3P12111 DGCR10-201ENST00000609839 495 ntBASIC21.24■□□□□ 0.99
COL6A3P12111 AC117500.6-201ENST00000624871 588 ntBASIC21.24■□□□□ 0.99
COL6A3P12111 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL6A3P12111 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.24■□□□□ 0.99
COL6A3P12111 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.24■□□□□ 0.99
COL6A3P12111 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL6A3P12111 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC21.24■□□□□ 0.99
COL6A3P12111 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
COL6A3P12111 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.24■□□□□ 0.99
COL6A3P12111 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.23■□□□□ 0.99
COL6A3P12111 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A3P12111 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A3P12111 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A3P12111 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A3P12111 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
COL6A3P12111 MIR3652-201ENST00000579335 131 ntBASIC21.23■□□□□ 0.99
COL6A3P12111 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.23■□□□□ 0.99
COL6A3P12111 ABBA01031674.1-201ENST00000635145 728 ntBASIC21.23■□□□□ 0.99
COL6A3P12111 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A3P12111 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A3P12111 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A3P12111 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.23■□□□□ 0.99
COL6A3P12111 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A3P12111 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC21.23■□□□□ 0.99
COL6A3P12111 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL6A3P12111 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.23■□□□□ 0.99
COL6A3P12111 B3GAT3P1-201ENST00000471720 806 ntBASIC21.23■□□□□ 0.99
COL6A3P12111 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A3P12111 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A3P12111 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
COL6A3P12111 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
COL6A3P12111 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A3P12111 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
COL6A3P12111 FSCN1P1-201ENST00000568912 1481 ntBASIC21.22■□□□□ 0.99
COL6A3P12111 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
COL6A3P12111 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL6A3P12111 PRELID1P1-202ENST00000567272 903 ntBASIC21.22■□□□□ 0.99
COL6A3P12111 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms