Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.6■□□□□ 0.73
PCNAP12004 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCNAP12004 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.6■□□□□ 0.73
PCNAP12004 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCNAP12004 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PCNAP12004 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCNAP12004 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCNAP12004 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
PCNAP12004 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCNAP12004 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.59■□□□□ 0.73
PCNAP12004 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCNAP12004 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCNAP12004 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCNAP12004 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCNAP12004 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.59■□□□□ 0.73
PCNAP12004 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
PCNAP12004 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
PCNAP12004 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCNAP12004 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCNAP12004 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCNAP12004 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCNAP12004 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCNAP12004 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.59■□□□□ 0.73
PCNAP12004 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.59■□□□□ 0.73
PCNAP12004 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.59■□□□□ 0.73
PCNAP12004 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.59■□□□□ 0.73
PCNAP12004 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.59■□□□□ 0.73
PCNAP12004 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCNAP12004 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.59■□□□□ 0.73
PCNAP12004 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
PCNAP12004 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PCNAP12004 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCNAP12004 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.58■□□□□ 0.73
PCNAP12004 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PCNAP12004 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.58■□□□□ 0.73
PCNAP12004 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.58■□□□□ 0.73
PCNAP12004 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCNAP12004 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.58■□□□□ 0.73
PCNAP12004 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.58■□□□□ 0.73
PCNAP12004 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCNAP12004 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PCNAP12004 CNN2P6-201ENST00000439038 900 ntBASIC19.58■□□□□ 0.72
PCNAP12004 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.58■□□□□ 0.72
PCNAP12004 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.58■□□□□ 0.72
PCNAP12004 IKBKGP1-201ENST00000612193 1073 ntBASIC19.58■□□□□ 0.72
PCNAP12004 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
PCNAP12004 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
PCNAP12004 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PCNAP12004 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PCNAP12004 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PCNAP12004 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PCNAP12004 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.57■□□□□ 0.72
PCNAP12004 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCNAP12004 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCNAP12004 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCNAP12004 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.57■□□□□ 0.72
PCNAP12004 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCNAP12004 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCNAP12004 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCNAP12004 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
PCNAP12004 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.57■□□□□ 0.72
PCNAP12004 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.57■□□□□ 0.72
PCNAP12004 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
PCNAP12004 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCNAP12004 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCNAP12004 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
PCNAP12004 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCNAP12004 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.57■□□□□ 0.72
PCNAP12004 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
PCNAP12004 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.57■□□□□ 0.72
PCNAP12004 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
PCNAP12004 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCNAP12004 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.57■□□□□ 0.72
PCNAP12004 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.57■□□□□ 0.72
PCNAP12004 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.56■□□□□ 0.72
PCNAP12004 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 AC007322.1-201ENST00000426983 750 ntBASIC19.56■□□□□ 0.72
PCNAP12004 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.56■□□□□ 0.72
PCNAP12004 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
PCNAP12004 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.56■□□□□ 0.72
PCNAP12004 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.56■□□□□ 0.72
PCNAP12004 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
PCNAP12004 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCNAP12004 AC068338.2-201ENST00000563278 1430 ntBASIC19.56■□□□□ 0.72
PCNAP12004 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.56■□□□□ 0.72
PCNAP12004 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.56■□□□□ 0.72
PCNAP12004 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms