Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC22.16■■□□□ 1.14
TPM1P09493 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TPM1P09493 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
TPM1P09493 NT5C3AP1-201ENST00000394500 1012 ntBASIC22.16■■□□□ 1.14
TPM1P09493 AC091305.1-201ENST00000479476 895 ntBASIC22.16■■□□□ 1.14
TPM1P09493 TPRG1LP1-201ENST00000598702 760 ntBASIC22.16■■□□□ 1.14
TPM1P09493 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
TPM1P09493 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
TPM1P09493 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TPM1P09493 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TPM1P09493 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC22.16■■□□□ 1.14
TPM1P09493 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TPM1P09493 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TPM1P09493 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC22.16■■□□□ 1.14
TPM1P09493 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC22.16■■□□□ 1.14
TPM1P09493 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TPM1P09493 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
TPM1P09493 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC22.15■■□□□ 1.14
TPM1P09493 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TPM1P09493 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TPM1P09493 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC22.15■■□□□ 1.14
TPM1P09493 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC22.15■■□□□ 1.14
TPM1P09493 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TPM1P09493 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TPM1P09493 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC22.15■■□□□ 1.14
TPM1P09493 AC138907.5-202ENST00000569484 235 ntBASIC22.15■■□□□ 1.14
TPM1P09493 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TPM1P09493 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
TPM1P09493 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TPM1P09493 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
TPM1P09493 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
TPM1P09493 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
TPM1P09493 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
TPM1P09493 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
TPM1P09493 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TPM1P09493 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TPM1P09493 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
TPM1P09493 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TPM1P09493 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC22.14■■□□□ 1.13
TPM1P09493 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TPM1P09493 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC22.14■■□□□ 1.13
TPM1P09493 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
TPM1P09493 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TPM1P09493 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
TPM1P09493 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
TPM1P09493 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC22.14■■□□□ 1.13
TPM1P09493 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC22.13■■□□□ 1.13
TPM1P09493 MCC-208ENST00000514701 2855 ntTSL 2 BASIC22.13■■□□□ 1.13
TPM1P09493 AC008406.3-201ENST00000620001 1374 ntBASIC22.13■■□□□ 1.13
TPM1P09493 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TPM1P09493 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
TPM1P09493 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
TPM1P09493 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
TPM1P09493 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC22.13■■□□□ 1.13
TPM1P09493 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TPM1P09493 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TPM1P09493 MTURN-203ENST00000409688 843 ntTSL 2 BASIC22.13■■□□□ 1.13
TPM1P09493 SERP1-208ENST00000491660 830 ntTSL 2 BASIC22.13■■□□□ 1.13
TPM1P09493 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TPM1P09493 AF213884.3-201ENST00000563833 479 ntBASIC22.13■■□□□ 1.13
TPM1P09493 AC131212.1-201ENST00000613771 668 ntBASIC22.13■■□□□ 1.13
TPM1P09493 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC22.13■■□□□ 1.13
TPM1P09493 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
TPM1P09493 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
TPM1P09493 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TPM1P09493 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
TPM1P09493 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC22.13■■□□□ 1.13
TPM1P09493 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC22.13■■□□□ 1.13
TPM1P09493 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TPM1P09493 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
TPM1P09493 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC22.12■■□□□ 1.13
TPM1P09493 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC22.12■■□□□ 1.13
TPM1P09493 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC22.12■■□□□ 1.13
TPM1P09493 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC22.12■■□□□ 1.13
TPM1P09493 MIR939-201ENST00000401314 82 ntBASIC22.12■■□□□ 1.13
TPM1P09493 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC22.12■■□□□ 1.13
TPM1P09493 PTPA-214ENST00000423100 988 ntTSL 2 BASIC22.12■■□□□ 1.13
TPM1P09493 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
TPM1P09493 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC22.12■■□□□ 1.13
TPM1P09493 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
TPM1P09493 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TPM1P09493 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC22.11■■□□□ 1.13
TPM1P09493 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
TPM1P09493 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
TPM1P09493 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC22.11■■□□□ 1.13
TPM1P09493 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
TPM1P09493 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms