Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SPTA1P02549 C9orf163-202ENST00000624034 2573 ntBASIC18.35■□□□□ 0.53
SPTA1P02549 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SPTA1P02549 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SPTA1P02549 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SPTA1P02549 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.35■□□□□ 0.53
SPTA1P02549 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.35■□□□□ 0.53
SPTA1P02549 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SPTA1P02549 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.35■□□□□ 0.53
SPTA1P02549 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.35■□□□□ 0.53
SPTA1P02549 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SPTA1P02549 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.35■□□□□ 0.53
SPTA1P02549 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SPTA1P02549 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.35■□□□□ 0.53
SPTA1P02549 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SPTA1P02549 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.34■□□□□ 0.53
SPTA1P02549 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SPTA1P02549 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SPTA1P02549 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SPTA1P02549 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.34■□□□□ 0.53
SPTA1P02549 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SPTA1P02549 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.34■□□□□ 0.53
SPTA1P02549 FAM87A-204ENST00000613235 858 ntBASIC18.34■□□□□ 0.53
SPTA1P02549 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
SPTA1P02549 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SPTA1P02549 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SPTA1P02549 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
SPTA1P02549 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SPTA1P02549 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SPTA1P02549 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SPTA1P02549 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SPTA1P02549 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.34■□□□□ 0.53
SPTA1P02549 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SPTA1P02549 AC063952.2-201ENST00000498792 1227 ntBASIC18.34■□□□□ 0.53
SPTA1P02549 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SPTA1P02549 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SPTA1P02549 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SPTA1P02549 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.33■□□□□ 0.53
SPTA1P02549 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.33■□□□□ 0.53
SPTA1P02549 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.33■□□□□ 0.53
SPTA1P02549 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.33■□□□□ 0.53
SPTA1P02549 BX664615.1-201ENST00000443558 458 ntBASIC18.33■□□□□ 0.53
SPTA1P02549 AC009947.2-201ENST00000444014 672 ntBASIC18.33■□□□□ 0.53
SPTA1P02549 ATP5G1P1-201ENST00000448724 379 ntBASIC18.33■□□□□ 0.53
SPTA1P02549 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.33■□□□□ 0.53
SPTA1P02549 MYC-208ENST00000641036 567 ntBASIC18.33■□□□□ 0.53
SPTA1P02549 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SPTA1P02549 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.53
SPTA1P02549 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.33■□□□□ 0.53
SPTA1P02549 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SPTA1P02549 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SPTA1P02549 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.33■□□□□ 0.52
SPTA1P02549 ME2-206ENST00000638410 2289 ntTSL 5 BASIC18.33■□□□□ 0.52
SPTA1P02549 ME2-210ENST00000639255 2262 ntTSL 5 BASIC18.33■□□□□ 0.52
SPTA1P02549 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.33■□□□□ 0.52
SPTA1P02549 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SPTA1P02549 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SPTA1P02549 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
SPTA1P02549 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SPTA1P02549 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SPTA1P02549 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.32■□□□□ 0.52
SPTA1P02549 AC022616.7-201ENST00000525383 220 ntBASIC18.32■□□□□ 0.52
SPTA1P02549 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.32■□□□□ 0.52
SPTA1P02549 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.32■□□□□ 0.52
SPTA1P02549 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SPTA1P02549 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
SPTA1P02549 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SPTA1P02549 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SPTA1P02549 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SPTA1P02549 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SPTA1P02549 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.32■□□□□ 0.52
SPTA1P02549 NIFKP9-201ENST00000419265 221 ntBASIC18.32■□□□□ 0.52
SPTA1P02549 AL445675.2-201ENST00000620291 557 ntBASIC18.32■□□□□ 0.52
SPTA1P02549 AC006011.2-201ENST00000621313 1158 ntBASIC18.32■□□□□ 0.52
SPTA1P02549 AP000550.4-202ENST00000639755 178 ntBASIC18.32■□□□□ 0.52
SPTA1P02549 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SPTA1P02549 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SPTA1P02549 PKD1P6-201ENST00000343738 4769 ntBASIC18.32■□□□□ 0.52
SPTA1P02549 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SPTA1P02549 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SPTA1P02549 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SPTA1P02549 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.31■□□□□ 0.52
SPTA1P02549 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SPTA1P02549 NAPSB-206ENST00000562112 1266 ntBASIC18.31■□□□□ 0.52
SPTA1P02549 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.31■□□□□ 0.52
SPTA1P02549 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SPTA1P02549 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SPTA1P02549 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SPTA1P02549 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SPTA1P02549 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
SPTA1P02549 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SPTA1P02549 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SPTA1P02549 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SPTA1P02549 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SPTA1P02549 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.31■□□□□ 0.52
SPTA1P02549 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SPTA1P02549 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.31■□□□□ 0.52
SPTA1P02549 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SPTA1P02549 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SPTA1P02549 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms