Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 C2orf69P4-201ENST00000565394 541 ntBASIC19■□□□□ 0.63
LDB3O75112 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19■□□□□ 0.63
LDB3O75112 AC133041.1-202ENST00000642053 222 ntBASIC19■□□□□ 0.63
LDB3O75112 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19■□□□□ 0.63
LDB3O75112 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LDB3O75112 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
LDB3O75112 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LDB3O75112 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19■□□□□ 0.63
LDB3O75112 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LDB3O75112 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19■□□□□ 0.63
LDB3O75112 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
LDB3O75112 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19■□□□□ 0.63
LDB3O75112 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LDB3O75112 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LDB3O75112 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.99■□□□□ 0.63
LDB3O75112 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LDB3O75112 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LDB3O75112 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
LDB3O75112 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LDB3O75112 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.99■□□□□ 0.63
LDB3O75112 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.99■□□□□ 0.63
LDB3O75112 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LDB3O75112 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.99■□□□□ 0.63
LDB3O75112 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
LDB3O75112 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LDB3O75112 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LDB3O75112 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LDB3O75112 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.99■□□□□ 0.63
LDB3O75112 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.98■□□□□ 0.63
LDB3O75112 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.98■□□□□ 0.63
LDB3O75112 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.98■□□□□ 0.63
LDB3O75112 AL512408.1-201ENST00000569378 2000 ntBASIC18.98■□□□□ 0.63
LDB3O75112 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDB3O75112 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDB3O75112 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDB3O75112 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDB3O75112 AC073210.2-201ENST00000430369 194 ntBASIC18.98■□□□□ 0.63
LDB3O75112 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.98■□□□□ 0.63
LDB3O75112 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.98■□□□□ 0.63
LDB3O75112 AC097658.1-201ENST00000475555 843 ntBASIC18.98■□□□□ 0.63
LDB3O75112 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.98■□□□□ 0.63
LDB3O75112 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDB3O75112 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LDB3O75112 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LDB3O75112 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
LDB3O75112 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LDB3O75112 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDB3O75112 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDB3O75112 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LDB3O75112 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
LDB3O75112 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.97■□□□□ 0.63
LDB3O75112 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDB3O75112 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDB3O75112 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
LDB3O75112 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDB3O75112 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LDB3O75112 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LDB3O75112 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LDB3O75112 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.97■□□□□ 0.63
LDB3O75112 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.97■□□□□ 0.63
LDB3O75112 MYC-209ENST00000641252 345 ntBASIC18.97■□□□□ 0.63
LDB3O75112 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.97■□□□□ 0.63
LDB3O75112 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
LDB3O75112 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDB3O75112 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.97■□□□□ 0.63
LDB3O75112 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.97■□□□□ 0.63
LDB3O75112 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LDB3O75112 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.96■□□□□ 0.63
LDB3O75112 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDB3O75112 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.96■□□□□ 0.63
LDB3O75112 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.96■□□□□ 0.63
LDB3O75112 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.96■□□□□ 0.63
LDB3O75112 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LDB3O75112 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.96■□□□□ 0.63
LDB3O75112 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.96■□□□□ 0.63
LDB3O75112 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LDB3O75112 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.96■□□□□ 0.63
LDB3O75112 AC083880.1-201ENST00000608266 535 ntBASIC18.96■□□□□ 0.63
LDB3O75112 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDB3O75112 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDB3O75112 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDB3O75112 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDB3O75112 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LDB3O75112 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LDB3O75112 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDB3O75112 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDB3O75112 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LDB3O75112 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.95■□□□□ 0.62
LDB3O75112 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
LDB3O75112 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.95■□□□□ 0.62
LDB3O75112 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.95■□□□□ 0.62
LDB3O75112 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.95■□□□□ 0.62
LDB3O75112 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.95■□□□□ 0.62
LDB3O75112 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
LDB3O75112 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.95■□□□□ 0.62
LDB3O75112 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDB3O75112 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LDB3O75112 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LDB3O75112 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
LDB3O75112 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms