Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
MSH5O43196 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC27.11■■□□□ 1.93
MSH5O43196 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
MSH5O43196 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC27.11■■□□□ 1.93
MSH5O43196 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
MSH5O43196 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC27.11■■□□□ 1.93
MSH5O43196 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC27.11■■□□□ 1.93
MSH5O43196 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
MSH5O43196 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC27.11■■□□□ 1.93
MSH5O43196 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
MSH5O43196 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
MSH5O43196 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC27.11■■□□□ 1.93
MSH5O43196 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC27.11■■□□□ 1.93
MSH5O43196 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC27.11■■□□□ 1.93
MSH5O43196 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
MSH5O43196 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC27.11■■□□□ 1.93
MSH5O43196 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC27.1■■□□□ 1.93
MSH5O43196 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
MSH5O43196 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
MSH5O43196 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
MSH5O43196 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC27.1■■□□□ 1.93
MSH5O43196 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC27.1■■□□□ 1.93
MSH5O43196 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
MSH5O43196 LSM12P1-201ENST00000411836 588 ntBASIC27.1■■□□□ 1.93
MSH5O43196 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC27.1■■□□□ 1.93
MSH5O43196 AC010422.1-201ENST00000414548 543 ntTSL 2 BASIC27.1■■□□□ 1.93
MSH5O43196 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC27.1■■□□□ 1.93
MSH5O43196 FAM210CP-201ENST00000445714 574 ntBASIC27.1■■□□□ 1.93
MSH5O43196 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC27.1■■□□□ 1.93
MSH5O43196 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC27.1■■□□□ 1.93
MSH5O43196 HNRNPA1P23-201ENST00000491091 1133 ntBASIC27.1■■□□□ 1.93
MSH5O43196 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC27.1■■□□□ 1.93
MSH5O43196 AC087762.1-201ENST00000559755 643 ntTSL 3 BASIC27.1■■□□□ 1.93
MSH5O43196 AC068631.1-255ENST00000608173 588 ntTSL 5 BASIC27.1■■□□□ 1.93
MSH5O43196 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
MSH5O43196 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
MSH5O43196 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC27.1■■□□□ 1.93
MSH5O43196 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
MSH5O43196 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
MSH5O43196 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC27.1■■□□□ 1.93
MSH5O43196 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC27.09■■□□□ 1.93
MSH5O43196 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
MSH5O43196 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC27.09■■□□□ 1.93
MSH5O43196 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
MSH5O43196 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC27.09■■□□□ 1.93
MSH5O43196 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
MSH5O43196 AC211429.1-201ENST00000415277 523 ntBASIC27.09■■□□□ 1.93
MSH5O43196 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC27.09■■□□□ 1.93
MSH5O43196 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC27.09■■□□□ 1.93
MSH5O43196 MIR4497-201ENST00000583208 89 ntBASIC27.09■■□□□ 1.93
MSH5O43196 AC008507.2-201ENST00000588402 1176 ntBASIC27.09■■□□□ 1.93
MSH5O43196 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC27.09■■□□□ 1.93
MSH5O43196 AL591742.1-201ENST00000604433 565 ntBASIC27.09■■□□□ 1.93
MSH5O43196 AC010331.1-201ENST00000611423 582 ntBASIC27.09■■□□□ 1.93
MSH5O43196 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC27.09■■□□□ 1.93
MSH5O43196 CBR3-AS1-213ENST00000623647 815 ntTSL 5 BASIC27.09■■□□□ 1.93
MSH5O43196 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC27.09■■□□□ 1.93
MSH5O43196 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC27.09■■□□□ 1.93
MSH5O43196 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC27.08■■□□□ 1.93
MSH5O43196 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC27.08■■□□□ 1.93
MSH5O43196 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC27.08■■□□□ 1.93
MSH5O43196 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.93
MSH5O43196 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
MSH5O43196 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC27.08■■□□□ 1.93
MSH5O43196 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
MSH5O43196 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
MSH5O43196 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
MSH5O43196 AL035696.2-201ENST00000407941 709 ntBASIC27.08■■□□□ 1.93
MSH5O43196 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
MSH5O43196 RSL24D1P2-201ENST00000445584 366 ntBASIC27.08■■□□□ 1.93
MSH5O43196 GATS-209ENST00000454084 1030 ntTSL 3 BASIC27.08■■□□□ 1.93
MSH5O43196 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
MSH5O43196 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC27.08■■□□□ 1.93
MSH5O43196 AC093648.1-201ENST00000623546 606 ntBASIC27.08■■□□□ 1.93
MSH5O43196 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
MSH5O43196 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC27.08■■□□□ 1.92
MSH5O43196 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
MSH5O43196 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
MSH5O43196 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
MSH5O43196 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC27.07■■□□□ 1.92
MSH5O43196 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
MSH5O43196 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
MSH5O43196 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
MSH5O43196 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC27.07■■□□□ 1.92
MSH5O43196 TMF1P1-201ENST00000576058 373 ntBASIC27.07■■□□□ 1.92
MSH5O43196 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC27.07■■□□□ 1.92
MSH5O43196 AC097478.2-201ENST00000610572 514 ntBASIC27.07■■□□□ 1.92
MSH5O43196 AC008175.2-201ENST00000612840 297 ntBASIC27.07■■□□□ 1.92
MSH5O43196 REXO1L12P-201ENST00000622156 912 ntBASIC27.07■■□□□ 1.92
MSH5O43196 AC097520.1-201ENST00000624435 385 ntBASIC27.07■■□□□ 1.92
MSH5O43196 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
MSH5O43196 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
MSH5O43196 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
MSH5O43196 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC27.07■■□□□ 1.92
MSH5O43196 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC27.07■■□□□ 1.92
MSH5O43196 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
MSH5O43196 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
MSH5O43196 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
MSH5O43196 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
MSH5O43196 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms