Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.61■□□□□ 0.89
CBX4O00257 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.61■□□□□ 0.89
CBX4O00257 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.6■□□□□ 0.89
CBX4O00257 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.6■□□□□ 0.89
CBX4O00257 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.6■□□□□ 0.89
CBX4O00257 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
CBX4O00257 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.6■□□□□ 0.89
CBX4O00257 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.6■□□□□ 0.89
CBX4O00257 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 AC092720.2-201ENST00000602388 1665 ntBASIC20.6■□□□□ 0.89
CBX4O00257 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CBX4O00257 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CBX4O00257 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.59■□□□□ 0.89
CBX4O00257 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.59■□□□□ 0.89
CBX4O00257 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CBX4O00257 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.59■□□□□ 0.89
CBX4O00257 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.59■□□□□ 0.89
CBX4O00257 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.59■□□□□ 0.89
CBX4O00257 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
CBX4O00257 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
CBX4O00257 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.59■□□□□ 0.89
CBX4O00257 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CBX4O00257 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CBX4O00257 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CBX4O00257 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CBX4O00257 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CBX4O00257 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.59■□□□□ 0.89
CBX4O00257 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CBX4O00257 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.59■□□□□ 0.89
CBX4O00257 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CBX4O00257 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CBX4O00257 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CBX4O00257 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CBX4O00257 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CBX4O00257 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.58■□□□□ 0.89
CBX4O00257 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
CBX4O00257 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.58■□□□□ 0.89
CBX4O00257 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CBX4O00257 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CBX4O00257 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CBX4O00257 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.58■□□□□ 0.89
CBX4O00257 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CBX4O00257 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CBX4O00257 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CBX4O00257 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CBX4O00257 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CBX4O00257 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
CBX4O00257 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CBX4O00257 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.58■□□□□ 0.89
CBX4O00257 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.58■□□□□ 0.89
CBX4O00257 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.58■□□□□ 0.89
CBX4O00257 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CBX4O00257 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.58■□□□□ 0.89
CBX4O00257 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.58■□□□□ 0.89
CBX4O00257 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CBX4O00257 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.58■□□□□ 0.89
CBX4O00257 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CBX4O00257 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CBX4O00257 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.58■□□□□ 0.88
CBX4O00257 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.58■□□□□ 0.88
CBX4O00257 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CBX4O00257 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
CBX4O00257 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.58■□□□□ 0.88
CBX4O00257 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CBX4O00257 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CBX4O00257 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CBX4O00257 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CBX4O00257 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CBX4O00257 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CBX4O00257 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CBX4O00257 ESRRAP1-201ENST00000400596 1257 ntBASIC20.57■□□□□ 0.88
CBX4O00257 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.57■□□□□ 0.88
CBX4O00257 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.57■□□□□ 0.88
CBX4O00257 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CBX4O00257 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CBX4O00257 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CBX4O00257 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CBX4O00257 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CBX4O00257 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms