Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC012313.10-201ENST00000623509 926 ntBASIC15.82■□□□□ 0.12
COL6A5A8TX70 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
COL6A5A8TX70 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A5A8TX70 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC15.82■□□□□ 0.12
COL6A5A8TX70 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A5A8TX70 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A5A8TX70 FXN-203ENST00000396366 922 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A5A8TX70 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
COL6A5A8TX70 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A5A8TX70 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL6A5A8TX70 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A5A8TX70 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A5A8TX70 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A5A8TX70 AC097488.1-201ENST00000507834 756 ntBASIC15.81■□□□□ 0.12
COL6A5A8TX70 MIR3652-201ENST00000579335 131 ntBASIC15.81■□□□□ 0.12
COL6A5A8TX70 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A5A8TX70 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A5A8TX70 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL6A5A8TX70 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A5A8TX70 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A5A8TX70 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A5A8TX70 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A5A8TX70 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A5A8TX70 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL6A5A8TX70 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A5A8TX70 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A5A8TX70 ANKRD20A18P-201ENST00000359341 492 ntBASIC15.81■□□□□ 0.12
COL6A5A8TX70 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.81■□□□□ 0.12
COL6A5A8TX70 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC15.81■□□□□ 0.12
COL6A5A8TX70 PRR29-207ENST00000580752 458 ntTSL 3 BASIC15.81■□□□□ 0.12
COL6A5A8TX70 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A5A8TX70 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A5A8TX70 FSCN1P1-201ENST00000568912 1481 ntBASIC15.8■□□□□ 0.12
COL6A5A8TX70 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A5A8TX70 AC116050.2-201ENST00000612102 1779 ntBASIC15.8■□□□□ 0.12
COL6A5A8TX70 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A5A8TX70 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A5A8TX70 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A5A8TX70 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A5A8TX70 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A5A8TX70 UNC93B7-201ENST00000509439 705 ntBASIC15.8■□□□□ 0.12
COL6A5A8TX70 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A5A8TX70 AC117500.6-201ENST00000624871 588 ntBASIC15.8■□□□□ 0.12
COL6A5A8TX70 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A5A8TX70 AC092068.2-201ENST00000590491 1708 ntBASIC15.8■□□□□ 0.12
COL6A5A8TX70 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A5A8TX70 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A5A8TX70 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
COL6A5A8TX70 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A5A8TX70 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A5A8TX70 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC15.8■□□□□ 0.12
COL6A5A8TX70 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A5A8TX70 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 PPP1R14BP5-201ENST00000440334 435 ntBASIC15.79■□□□□ 0.12
COL6A5A8TX70 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 AC011506.1-201ENST00000474329 610 ntBASIC15.79■□□□□ 0.12
COL6A5A8TX70 LINC02084-201ENST00000606069 1096 ntBASIC15.79■□□□□ 0.12
COL6A5A8TX70 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 HOMER2P1-201ENST00000455653 964 ntBASIC15.79■□□□□ 0.12
COL6A5A8TX70 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A5A8TX70 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC15.79■□□□□ 0.12
COL6A5A8TX70 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A5A8TX70 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A5A8TX70 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A5A8TX70 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A5A8TX70 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A5A8TX70 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A5A8TX70 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
COL6A5A8TX70 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
COL6A5A8TX70 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A5A8TX70 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
COL6A5A8TX70 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC15.78■□□□□ 0.12
COL6A5A8TX70 DFFB-212ENST00000625756 649 ntTSL 5 BASIC15.78■□□□□ 0.12
COL6A5A8TX70 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms