Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 OAS3-207ENST00000551007 998 ntTSL 2 BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC27.14■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC27.14■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 AL355472.2-201ENST00000422958 438 ntBASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 KRT18P11-201ENST00000435214 1283 ntBASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 GXYLT1P3-201ENST00000453058 1193 ntBASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 UNC93B4-201ENST00000505679 747 ntBASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 SLC7A5P1-201ENST00000568957 537 ntBASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 AC068338.2-201ENST00000563278 1430 ntBASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 AC098934.4-201ENST00000564127 592 ntBASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 AC007322.3-201ENST00000426526 701 ntBASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 AC073210.2-201ENST00000430369 194 ntBASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
SENP3-EIF4A1A0A087X0R7 STK25-205ENST00000405883 1904 ntTSL 2 BASIC27.11■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms