Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.36■□□□□ 0.53
SHANK1Q9Y566 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.35■□□□□ 0.53
SHANK1Q9Y566 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
SHANK1Q9Y566 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 FAM99A-202ENST00000538190 1989 ntBASIC18.34■□□□□ 0.53
SHANK1Q9Y566 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 AC006557.6-201ENST00000623071 864 ntBASIC18.34■□□□□ 0.53
SHANK1Q9Y566 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.34■□□□□ 0.53
SHANK1Q9Y566 AC026310.3-201ENST00000625186 2373 ntBASIC18.33■□□□□ 0.53
SHANK1Q9Y566 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.33■□□□□ 0.52
SHANK1Q9Y566 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.33■□□□□ 0.52
SHANK1Q9Y566 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.33■□□□□ 0.52
SHANK1Q9Y566 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.33■□□□□ 0.52
SHANK1Q9Y566 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHANK1Q9Y566 AC026471.5-201ENST00000615068 467 ntBASIC18.33■□□□□ 0.52
SHANK1Q9Y566 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHANK1Q9Y566 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC18.33■□□□□ 0.52
SHANK1Q9Y566 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SHANK1Q9Y566 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHANK1Q9Y566 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHANK1Q9Y566 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.33■□□□□ 0.52
SHANK1Q9Y566 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 AC113347.1-201ENST00000413321 391 ntBASIC18.32■□□□□ 0.52
SHANK1Q9Y566 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK1Q9Y566 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHANK1Q9Y566 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms