Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
RTCBQ9Y3I0 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
RTCBQ9Y3I0 PALM-207ENST00000590161 2137 ntTSL 4 BASIC25.66■■□□□ 1.7
RTCBQ9Y3I0 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC25.66■■□□□ 1.7
RTCBQ9Y3I0 CYP2D8P-201ENST00000433633 1490 ntBASIC25.66■■□□□ 1.7
RTCBQ9Y3I0 KRT18P22-201ENST00000402024 1347 ntBASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 TERF1P1-201ENST00000311003 1181 ntBASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 AL390955.1-201ENST00000428694 934 ntBASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 AL137013.1-201ENST00000432946 1228 ntBASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
RTCBQ9Y3I0 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
RTCBQ9Y3I0 ME2-208ENST00000638937 2471 ntTSL 5 BASIC25.64■■□□□ 1.7
RTCBQ9Y3I0 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
RTCBQ9Y3I0 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
RTCBQ9Y3I0 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC25.64■■□□□ 1.7
RTCBQ9Y3I0 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
RTCBQ9Y3I0 CRAT-202ENST00000393384 973 ntTSL 2 BASIC25.64■■□□□ 1.7
RTCBQ9Y3I0 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC25.64■■□□□ 1.7
RTCBQ9Y3I0 FITM1-202ENST00000559294 800 ntBASIC25.64■■□□□ 1.7
RTCBQ9Y3I0 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
RTCBQ9Y3I0 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
RTCBQ9Y3I0 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
RTCBQ9Y3I0 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
RTCBQ9Y3I0 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC25.64■■□□□ 1.69
RTCBQ9Y3I0 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 AC242852.2-201ENST00000615738 1807 ntBASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 AC116562.2-201ENST00000507042 360 ntBASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 AC010947.1-201ENST00000623454 693 ntBASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 KRT8P36-201ENST00000489121 1440 ntBASIC25.63■■□□□ 1.69
RTCBQ9Y3I0 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 CR392000.1-201ENST00000624770 1228 ntBASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 AC073508.3-201ENST00000619697 1419 ntBASIC25.62■■□□□ 1.69
RTCBQ9Y3I0 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTCBQ9Y3I0 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC25.61■■□□□ 1.69
RTCBQ9Y3I0 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTCBQ9Y3I0 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC25.61■■□□□ 1.69
RTCBQ9Y3I0 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
RTCBQ9Y3I0 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
RTCBQ9Y3I0 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTCBQ9Y3I0 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTCBQ9Y3I0 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC25.61■■□□□ 1.69
RTCBQ9Y3I0 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RTCBQ9Y3I0 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC25.6■■□□□ 1.69
RTCBQ9Y3I0 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
RTCBQ9Y3I0 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
RTCBQ9Y3I0 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
RTCBQ9Y3I0 KSR1P1-201ENST00000446298 240 ntBASIC25.6■■□□□ 1.69
RTCBQ9Y3I0 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC25.6■■□□□ 1.69
RTCBQ9Y3I0 CFL2-205ENST00000555765 632 ntTSL 2 BASIC25.6■■□□□ 1.69
RTCBQ9Y3I0 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC25.6■■□□□ 1.69
RTCBQ9Y3I0 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
RTCBQ9Y3I0 CASK-201ENST00000378154 2494 ntTSL 5 BASIC25.6■■□□□ 1.69
RTCBQ9Y3I0 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms