Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 MKRN4P-201ENST00000444706 1521 ntBASIC21■□□□□ 0.95
AP4E1Q9UPM8 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
AP4E1Q9UPM8 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
AP4E1Q9UPM8 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21■□□□□ 0.95
AP4E1Q9UPM8 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21■□□□□ 0.95
AP4E1Q9UPM8 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
AP4E1Q9UPM8 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
AP4E1Q9UPM8 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
AP4E1Q9UPM8 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
AP4E1Q9UPM8 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21■□□□□ 0.95
AP4E1Q9UPM8 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21■□□□□ 0.95
AP4E1Q9UPM8 PPP1R14BP3-201ENST00000509033 445 ntBASIC21■□□□□ 0.95
AP4E1Q9UPM8 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21■□□□□ 0.95
AP4E1Q9UPM8 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21■□□□□ 0.95
AP4E1Q9UPM8 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
AP4E1Q9UPM8 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21■□□□□ 0.95
AP4E1Q9UPM8 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21■□□□□ 0.95
AP4E1Q9UPM8 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21■□□□□ 0.95
AP4E1Q9UPM8 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21■□□□□ 0.95
AP4E1Q9UPM8 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21■□□□□ 0.95
AP4E1Q9UPM8 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
AP4E1Q9UPM8 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 AL121832.2-201ENST00000610979 668 ntBASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 AL589743.5-201ENST00000616611 1050 ntBASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.99■□□□□ 0.95
AP4E1Q9UPM8 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.98■□□□□ 0.95
AP4E1Q9UPM8 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 AC083906.2-201ENST00000511578 360 ntBASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
AP4E1Q9UPM8 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
AP4E1Q9UPM8 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.95■□□□□ 0.95
AP4E1Q9UPM8 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms