Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS28Q9UK41 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS28Q9UK41 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS28Q9UK41 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS28Q9UK41 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.79■□□□□ 0.92
VPS28Q9UK41 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS28Q9UK41 MIR4651-201ENST00000582622 73 ntBASIC20.79■□□□□ 0.92
VPS28Q9UK41 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS28Q9UK41 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS28Q9UK41 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
VPS28Q9UK41 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
VPS28Q9UK41 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.78■□□□□ 0.92
VPS28Q9UK41 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
VPS28Q9UK41 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.78■□□□□ 0.92
VPS28Q9UK41 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
VPS28Q9UK41 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.78■□□□□ 0.92
VPS28Q9UK41 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS28Q9UK41 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS28Q9UK41 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS28Q9UK41 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS28Q9UK41 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
VPS28Q9UK41 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS28Q9UK41 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
VPS28Q9UK41 TSPY20P-201ENST00000450910 630 ntBASIC20.78■□□□□ 0.92
VPS28Q9UK41 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS28Q9UK41 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS28Q9UK41 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS28Q9UK41 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS28Q9UK41 AC092667.1-201ENST00000434301 2586 ntBASIC20.78■□□□□ 0.92
VPS28Q9UK41 KRT8P36-201ENST00000489121 1440 ntBASIC20.78■□□□□ 0.92
VPS28Q9UK41 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS28Q9UK41 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS28Q9UK41 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS28Q9UK41 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS28Q9UK41 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS28Q9UK41 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
VPS28Q9UK41 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS28Q9UK41 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.77■□□□□ 0.92
VPS28Q9UK41 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.77■□□□□ 0.92
VPS28Q9UK41 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.77■□□□□ 0.92
VPS28Q9UK41 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.77■□□□□ 0.92
VPS28Q9UK41 HLA-B-256ENST00000639848 1089 ntBASIC20.77■□□□□ 0.92
VPS28Q9UK41 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.77■□□□□ 0.91
VPS28Q9UK41 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.91
VPS28Q9UK41 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
VPS28Q9UK41 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS28Q9UK41 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS28Q9UK41 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS28Q9UK41 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS28Q9UK41 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS28Q9UK41 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS28Q9UK41 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS28Q9UK41 FP700111.2-201ENST00000619190 1892 ntBASIC20.76■□□□□ 0.91
VPS28Q9UK41 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS28Q9UK41 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS28Q9UK41 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS28Q9UK41 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.76■□□□□ 0.91
VPS28Q9UK41 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS28Q9UK41 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS28Q9UK41 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.76■□□□□ 0.91
VPS28Q9UK41 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
VPS28Q9UK41 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
VPS28Q9UK41 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.76■□□□□ 0.91
VPS28Q9UK41 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS28Q9UK41 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS28Q9UK41 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS28Q9UK41 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS28Q9UK41 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS28Q9UK41 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS28Q9UK41 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS28Q9UK41 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS28Q9UK41 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS28Q9UK41 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS28Q9UK41 ABHD17AP1-201ENST00000358206 933 ntBASIC20.75■□□□□ 0.91
VPS28Q9UK41 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.75■□□□□ 0.91
VPS28Q9UK41 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS28Q9UK41 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS28Q9UK41 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS28Q9UK41 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS28Q9UK41 AC060766.5-201ENST00000590539 871 ntBASIC20.75■□□□□ 0.91
VPS28Q9UK41 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS28Q9UK41 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS28Q9UK41 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS28Q9UK41 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS28Q9UK41 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS28Q9UK41 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS28Q9UK41 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS28Q9UK41 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS28Q9UK41 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS28Q9UK41 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS28Q9UK41 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
VPS28Q9UK41 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS28Q9UK41 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS28Q9UK41 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS28Q9UK41 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
VPS28Q9UK41 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS28Q9UK41 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
VPS28Q9UK41 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.74■□□□□ 0.91
VPS28Q9UK41 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS28Q9UK41 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms