Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 AL135905.2-201ENST00000584934 1404 ntBASIC20.91■□□□□ 0.94
TDP1Q9NUW8 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TDP1Q9NUW8 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TDP1Q9NUW8 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TDP1Q9NUW8 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.9■□□□□ 0.94
TDP1Q9NUW8 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TDP1Q9NUW8 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
TDP1Q9NUW8 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
TDP1Q9NUW8 AP001412.1-201ENST00000608405 714 ntBASIC20.9■□□□□ 0.94
TDP1Q9NUW8 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TDP1Q9NUW8 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TDP1Q9NUW8 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TDP1Q9NUW8 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TDP1Q9NUW8 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TDP1Q9NUW8 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TDP1Q9NUW8 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TDP1Q9NUW8 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
TDP1Q9NUW8 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TDP1Q9NUW8 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
TDP1Q9NUW8 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TDP1Q9NUW8 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.89■□□□□ 0.93
TDP1Q9NUW8 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.89■□□□□ 0.93
TDP1Q9NUW8 AL121829.2-201ENST00000620908 328 ntBASIC20.89■□□□□ 0.93
TDP1Q9NUW8 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.89■□□□□ 0.93
TDP1Q9NUW8 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.89■□□□□ 0.93
TDP1Q9NUW8 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TDP1Q9NUW8 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
TDP1Q9NUW8 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.89■□□□□ 0.93
TDP1Q9NUW8 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TDP1Q9NUW8 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 AL049637.2-201ENST00000641778 930 ntBASIC20.88■□□□□ 0.93
TDP1Q9NUW8 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
TDP1Q9NUW8 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.87■□□□□ 0.93
TDP1Q9NUW8 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TDP1Q9NUW8 FEM1AP4-201ENST00000443167 1987 ntBASIC20.86■□□□□ 0.93
TDP1Q9NUW8 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 KRT17P2-201ENST00000300992 1314 ntBASIC20.86■□□□□ 0.93
TDP1Q9NUW8 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 RARRES2P10-201ENST00000564312 460 ntBASIC20.86■□□□□ 0.93
TDP1Q9NUW8 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 AC073912.3-201ENST00000624414 853 ntBASIC20.86■□□□□ 0.93
TDP1Q9NUW8 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.86■□□□□ 0.93
TDP1Q9NUW8 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms