Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 AC007322.1-201ENST00000426983 750 ntBASIC21.75■■□□□ 1.07
SIX2Q9NPC8 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.74■■□□□ 1.07
SIX2Q9NPC8 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SIX2Q9NPC8 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX2Q9NPC8 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.74■■□□□ 1.07
SIX2Q9NPC8 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
SIX2Q9NPC8 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.74■■□□□ 1.07
SIX2Q9NPC8 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SIX2Q9NPC8 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
SIX2Q9NPC8 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.74■■□□□ 1.07
SIX2Q9NPC8 AL355472.2-201ENST00000422958 438 ntBASIC21.74■■□□□ 1.07
SIX2Q9NPC8 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
SIX2Q9NPC8 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SIX2Q9NPC8 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SIX2Q9NPC8 AC125437.2-201ENST00000625180 2167 ntBASIC21.74■■□□□ 1.07
SIX2Q9NPC8 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
SIX2Q9NPC8 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 CYP2T3P-201ENST00000601990 817 ntBASIC21.73■■□□□ 1.07
SIX2Q9NPC8 AC105020.6-201ENST00000621523 1217 ntBASIC21.73■■□□□ 1.07
SIX2Q9NPC8 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX2Q9NPC8 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 AC093787.1-201ENST00000450396 207 ntBASIC21.72■■□□□ 1.07
SIX2Q9NPC8 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.72■■□□□ 1.07
SIX2Q9NPC8 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.71■■□□□ 1.07
SIX2Q9NPC8 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 KRT18P68-201ENST00000392293 1000 ntBASIC21.71■■□□□ 1.07
SIX2Q9NPC8 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.71■■□□□ 1.07
SIX2Q9NPC8 AC010980.2-201ENST00000587099 1412 ntBASIC21.71■■□□□ 1.07
SIX2Q9NPC8 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
SIX2Q9NPC8 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
SIX2Q9NPC8 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
SIX2Q9NPC8 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.7■■□□□ 1.07
SIX2Q9NPC8 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
SIX2Q9NPC8 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
SIX2Q9NPC8 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms