Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 GALC-202ENST00000393568 2054 ntTSL 2 BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 TERT-206ENST00000508104 2486 ntTSL 5 BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
UPF3AQ9H1J1 NBPF21P-201ENST00000425093 1451 ntBASIC22.61■■□□□ 1.21
UPF3AQ9H1J1 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC22.61■■□□□ 1.21
UPF3AQ9H1J1 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
UPF3AQ9H1J1 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
UPF3AQ9H1J1 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
UPF3AQ9H1J1 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
UPF3AQ9H1J1 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
UPF3AQ9H1J1 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 GUSBP5-202ENST00000510805 1989 ntBASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 KRT8P36-201ENST00000489121 1440 ntBASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 AL355355.2-201ENST00000442321 338 ntBASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 PALM-207ENST00000590161 2137 ntTSL 4 BASIC22.6■■□□□ 1.21
UPF3AQ9H1J1 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 AC027702.1-201ENST00000563810 1770 ntBASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 TREX2-204ENST00000370212 861 ntTSL 5 BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 F2R-202ENST00000505600 442 ntTSL 2 BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 AC124283.5-201ENST00000624661 1809 ntBASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 PARN-205ENST00000539279 1557 ntTSL 2 BASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC22.59■■□□□ 1.21
UPF3AQ9H1J1 SRI-203ENST00000419179 1307 ntTSL 2 BASIC22.58■■□□□ 1.21
UPF3AQ9H1J1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC22.58■■□□□ 1.21
UPF3AQ9H1J1 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
UPF3AQ9H1J1 MMP23A-201ENST00000234610 1017 ntBASIC22.58■■□□□ 1.21
UPF3AQ9H1J1 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
UPF3AQ9H1J1 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.21
UPF3AQ9H1J1 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC22.58■■□□□ 1.21
UPF3AQ9H1J1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
UPF3AQ9H1J1 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
UPF3AQ9H1J1 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.2
UPF3AQ9H1J1 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
UPF3AQ9H1J1 TUB-203ENST00000534099 1759 ntTSL 2 BASIC22.58■■□□□ 1.2
UPF3AQ9H1J1 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC22.58■■□□□ 1.2
UPF3AQ9H1J1 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
UPF3AQ9H1J1 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 DYM-203ENST00000442713 2147 ntTSL 2 BASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 FAM197Y1-201ENST00000421178 764 ntBASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 AC073195.1-201ENST00000607241 877 ntBASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 AL121906.2-201ENST00000621597 723 ntBASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 MIR2861-201ENST00000636310 90 ntBASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
UPF3AQ9H1J1 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
UPF3AQ9H1J1 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
UPF3AQ9H1J1 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
UPF3AQ9H1J1 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
UPF3AQ9H1J1 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
UPF3AQ9H1J1 FDX2-207ENST00000494368 584 ntTSL 4 BASIC22.56■■□□□ 1.2
UPF3AQ9H1J1 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC22.56■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms