Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC28BQ9BUN5 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC28BQ9BUN5 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC28BQ9BUN5 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 AP000974.1-201ENST00000623909 2387 ntBASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC28BQ9BUN5 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 AC138907.5-202ENST00000569484 235 ntBASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC28BQ9BUN5 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 AC120498.10-201ENST00000621827 505 ntBASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC28BQ9BUN5 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 KRT8P36-201ENST00000489121 1440 ntBASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 AC004408.2-201ENST00000623613 2777 ntBASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 KRT87P-202ENST00000534226 1464 ntBASIC19.6■□□□□ 0.73
CCDC28BQ9BUN5 AL691432.2-201ENST00000607222 2038 ntBASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 DPP3P2-201ENST00000416030 1696 ntBASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 BX119927.1-201ENST00000636596 1552 ntBASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 AC005332.7-201ENST00000614046 2005 ntBASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms