Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HERPUD2Q9BSE4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 BX119927.1-201ENST00000636596 1552 ntBASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.97■□□□□ 0.95
HERPUD2Q9BSE4 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 CYP21A1P-202ENST00000354927 1481 ntBASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 CDV3P1-201ENST00000471403 739 ntBASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 FAM21FP-204ENST00000608637 956 ntBASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
HERPUD2Q9BSE4 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 AC137761.2-201ENST00000561729 223 ntBASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 AC145350.3-201ENST00000569033 163 ntBASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 MFSD11-216ENST00000590393 1141 ntBASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 AC087633.2-202ENST00000565166 1439 ntBASIC20.95■□□□□ 0.94
HERPUD2Q9BSE4 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HERPUD2Q9BSE4 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 AC016769.1-201ENST00000409132 1010 ntBASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 AL356652.1-201ENST00000615962 565 ntBASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms