Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
SPG11Q96JI7 PGM5P4-201ENST00000421970 445 ntBASIC17.21■□□□□ 0.35
SPG11Q96JI7 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SPG11Q96JI7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.21■□□□□ 0.35
SPG11Q96JI7 FAM99A-202ENST00000538190 1989 ntBASIC17.21■□□□□ 0.35
SPG11Q96JI7 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPG11Q96JI7 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SPG11Q96JI7 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SPG11Q96JI7 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.21■□□□□ 0.35
SPG11Q96JI7 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SPG11Q96JI7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SPG11Q96JI7 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPG11Q96JI7 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.21■□□□□ 0.35
SPG11Q96JI7 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
SPG11Q96JI7 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
SPG11Q96JI7 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
SPG11Q96JI7 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPG11Q96JI7 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPG11Q96JI7 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.2■□□□□ 0.34
SPG11Q96JI7 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SPG11Q96JI7 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.2■□□□□ 0.34
SPG11Q96JI7 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.2■□□□□ 0.34
SPG11Q96JI7 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.2■□□□□ 0.34
SPG11Q96JI7 AC091076.1-201ENST00000610741 619 ntBASIC17.2■□□□□ 0.34
SPG11Q96JI7 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.2■□□□□ 0.34
SPG11Q96JI7 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPG11Q96JI7 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPG11Q96JI7 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.2■□□□□ 0.34
SPG11Q96JI7 UNC93B2-201ENST00000285383 730 ntBASIC17.2■□□□□ 0.34
SPG11Q96JI7 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPG11Q96JI7 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.2■□□□□ 0.34
SPG11Q96JI7 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.2■□□□□ 0.34
SPG11Q96JI7 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.2■□□□□ 0.34
SPG11Q96JI7 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.2■□□□□ 0.34
SPG11Q96JI7 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
SPG11Q96JI7 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
SPG11Q96JI7 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SPG11Q96JI7 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPG11Q96JI7 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SPG11Q96JI7 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC17.19■□□□□ 0.34
SPG11Q96JI7 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.19■□□□□ 0.34
SPG11Q96JI7 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC17.19■□□□□ 0.34
SPG11Q96JI7 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.19■□□□□ 0.34
SPG11Q96JI7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.19■□□□□ 0.34
SPG11Q96JI7 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.19■□□□□ 0.34
SPG11Q96JI7 AC004264.1-201ENST00000608354 794 ntBASIC17.19■□□□□ 0.34
SPG11Q96JI7 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SPG11Q96JI7 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.19■□□□□ 0.34
SPG11Q96JI7 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.19■□□□□ 0.34
SPG11Q96JI7 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPG11Q96JI7 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SPG11Q96JI7 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SPG11Q96JI7 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.18■□□□□ 0.34
SPG11Q96JI7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SPG11Q96JI7 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.18■□□□□ 0.34
SPG11Q96JI7 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SPG11Q96JI7 AP002982.1-201ENST00000492365 877 ntBASIC17.18■□□□□ 0.34
SPG11Q96JI7 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.18■□□□□ 0.34
SPG11Q96JI7 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SPG11Q96JI7 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SPG11Q96JI7 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SPG11Q96JI7 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SPG11Q96JI7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.18■□□□□ 0.34
SPG11Q96JI7 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SPG11Q96JI7 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.18■□□□□ 0.34
SPG11Q96JI7 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SPG11Q96JI7 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPG11Q96JI7 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SPG11Q96JI7 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC17.17■□□□□ 0.34
SPG11Q96JI7 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC17.17■□□□□ 0.34
SPG11Q96JI7 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPG11Q96JI7 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.17■□□□□ 0.34
SPG11Q96JI7 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPG11Q96JI7 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SPG11Q96JI7 MIR1238-201ENST00000408483 83 ntBASIC17.17■□□□□ 0.34
SPG11Q96JI7 AK4P3-201ENST00000418260 669 ntBASIC17.17■□□□□ 0.34
SPG11Q96JI7 DUSP5P1-201ENST00000441325 1139 ntBASIC17.17■□□□□ 0.34
SPG11Q96JI7 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.17■□□□□ 0.34
SPG11Q96JI7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.17■□□□□ 0.34
SPG11Q96JI7 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPG11Q96JI7 AC087388.1-201ENST00000571370 1112 ntBASIC17.17■□□□□ 0.34
SPG11Q96JI7 AL358472.4-201ENST00000633140 710 ntBASIC17.17■□□□□ 0.34
SPG11Q96JI7 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
SPG11Q96JI7 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SPG11Q96JI7 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
SPG11Q96JI7 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.17■□□□□ 0.34
SPG11Q96JI7 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms