Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 AC027612.3-201ENST00000413684 1047 ntBASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 AP005435.1-201ENST00000529293 1178 ntBASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 AC125437.2-201ENST00000625180 2167 ntBASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
ZNF540Q8NDQ6 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.62■□□□□ 0.57
ZNF540Q8NDQ6 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 AC012414.1-201ENST00000556676 535 ntBASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ZNF540Q8NDQ6 AC011484.1-201ENST00000377652 1995 ntBASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms