Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.9■■□□□ 1.1
VPS52Q8N1B4 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VPS52Q8N1B4 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS52Q8N1B4 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.9■■□□□ 1.1
VPS52Q8N1B4 MIR4497-201ENST00000583208 89 ntBASIC21.9■■□□□ 1.1
VPS52Q8N1B4 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VPS52Q8N1B4 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS52Q8N1B4 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
VPS52Q8N1B4 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.9■■□□□ 1.1
VPS52Q8N1B4 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.89■■□□□ 1.1
VPS52Q8N1B4 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
VPS52Q8N1B4 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
VPS52Q8N1B4 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
VPS52Q8N1B4 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
VPS52Q8N1B4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.89■■□□□ 1.09
VPS52Q8N1B4 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
VPS52Q8N1B4 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
VPS52Q8N1B4 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.89■■□□□ 1.09
VPS52Q8N1B4 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
VPS52Q8N1B4 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS52Q8N1B4 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
VPS52Q8N1B4 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS52Q8N1B4 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
VPS52Q8N1B4 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS52Q8N1B4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS52Q8N1B4 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.88■■□□□ 1.09
VPS52Q8N1B4 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS52Q8N1B4 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS52Q8N1B4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VPS52Q8N1B4 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
VPS52Q8N1B4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS52Q8N1B4 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.88■■□□□ 1.09
VPS52Q8N1B4 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS52Q8N1B4 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS52Q8N1B4 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
VPS52Q8N1B4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS52Q8N1B4 AC087633.2-202ENST00000565166 1439 ntBASIC21.88■■□□□ 1.09
VPS52Q8N1B4 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.87■■□□□ 1.09
VPS52Q8N1B4 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
VPS52Q8N1B4 Z98882.1-201ENST00000622160 2253 ntBASIC21.87■■□□□ 1.09
VPS52Q8N1B4 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
VPS52Q8N1B4 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.87■■□□□ 1.09
VPS52Q8N1B4 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.87■■□□□ 1.09
VPS52Q8N1B4 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.87■■□□□ 1.09
VPS52Q8N1B4 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.87■■□□□ 1.09
VPS52Q8N1B4 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.87■■□□□ 1.09
VPS52Q8N1B4 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.87■■□□□ 1.09
VPS52Q8N1B4 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
VPS52Q8N1B4 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.87■■□□□ 1.09
VPS52Q8N1B4 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS52Q8N1B4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.86■■□□□ 1.09
VPS52Q8N1B4 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.86■■□□□ 1.09
VPS52Q8N1B4 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS52Q8N1B4 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS52Q8N1B4 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS52Q8N1B4 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS52Q8N1B4 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS52Q8N1B4 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS52Q8N1B4 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.86■■□□□ 1.09
VPS52Q8N1B4 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.86■■□□□ 1.09
VPS52Q8N1B4 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS52Q8N1B4 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.86■■□□□ 1.09
VPS52Q8N1B4 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS52Q8N1B4 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 SNORA78-201ENST00000459373 127 ntBASIC21.85■■□□□ 1.09
VPS52Q8N1B4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS52Q8N1B4 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.84■■□□□ 1.09
VPS52Q8N1B4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
VPS52Q8N1B4 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
VPS52Q8N1B4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS52Q8N1B4 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS52Q8N1B4 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS52Q8N1B4 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS52Q8N1B4 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS52Q8N1B4 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS52Q8N1B4 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms