Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
RFWD3Q6PCD5 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFWD3Q6PCD5 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.06■□□□□ 0.96
RFWD3Q6PCD5 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RFWD3Q6PCD5 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RFWD3Q6PCD5 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
RFWD3Q6PCD5 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 PGM5P4-201ENST00000421970 445 ntBASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RFWD3Q6PCD5 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.03■□□□□ 0.96
RFWD3Q6PCD5 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RFWD3Q6PCD5 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.02■□□□□ 0.95
RFWD3Q6PCD5 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RFWD3Q6PCD5 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RFWD3Q6PCD5 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
RFWD3Q6PCD5 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.02■□□□□ 0.95
RFWD3Q6PCD5 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RFWD3Q6PCD5 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RFWD3Q6PCD5 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RFWD3Q6PCD5 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RFWD3Q6PCD5 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
RFWD3Q6PCD5 LINC01006-201ENST00000333319 2292 ntBASIC21.01■□□□□ 0.95
RFWD3Q6PCD5 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFWD3Q6PCD5 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms