Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
FOXC1Q12948 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXC1Q12948 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXC1Q12948 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXC1Q12948 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.25■□□□□ 0.67
FOXC1Q12948 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.25■□□□□ 0.67
FOXC1Q12948 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
FOXC1Q12948 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.25■□□□□ 0.67
FOXC1Q12948 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.25■□□□□ 0.67
FOXC1Q12948 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
FOXC1Q12948 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
FOXC1Q12948 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.25■□□□□ 0.67
FOXC1Q12948 AC092647.4-201ENST00000457211 535 ntBASIC19.25■□□□□ 0.67
FOXC1Q12948 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.25■□□□□ 0.67
FOXC1Q12948 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.25■□□□□ 0.67
FOXC1Q12948 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.25■□□□□ 0.67
FOXC1Q12948 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.25■□□□□ 0.67
FOXC1Q12948 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
FOXC1Q12948 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXC1Q12948 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXC1Q12948 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXC1Q12948 FAM8A6P-201ENST00000407496 1135 ntBASIC19.24■□□□□ 0.67
FOXC1Q12948 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.24■□□□□ 0.67
FOXC1Q12948 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
FOXC1Q12948 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.24■□□□□ 0.67
FOXC1Q12948 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.24■□□□□ 0.67
FOXC1Q12948 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
FOXC1Q12948 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.24■□□□□ 0.67
FOXC1Q12948 AC139887.4-201ENST00000607877 719 ntBASIC19.24■□□□□ 0.67
FOXC1Q12948 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
FOXC1Q12948 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXC1Q12948 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
FOXC1Q12948 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXC1Q12948 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXC1Q12948 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXC1Q12948 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
FOXC1Q12948 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
FOXC1Q12948 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXC1Q12948 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXC1Q12948 TSPY14P-201ENST00000303979 915 ntBASIC19.23■□□□□ 0.67
FOXC1Q12948 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXC1Q12948 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXC1Q12948 PCED1CP-201ENST00000419887 785 ntBASIC19.23■□□□□ 0.67
FOXC1Q12948 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXC1Q12948 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.23■□□□□ 0.67
FOXC1Q12948 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.23■□□□□ 0.67
FOXC1Q12948 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXC1Q12948 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXC1Q12948 CREM-210ENST00000374721 2020 ntTSL 5 BASIC19.23■□□□□ 0.67
FOXC1Q12948 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
FOXC1Q12948 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXC1Q12948 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXC1Q12948 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
FOXC1Q12948 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
FOXC1Q12948 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXC1Q12948 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.22■□□□□ 0.67
FOXC1Q12948 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
FOXC1Q12948 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXC1Q12948 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXC1Q12948 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
FOXC1Q12948 RNF152P1-201ENST00000397754 604 ntBASIC19.22■□□□□ 0.67
FOXC1Q12948 HCG4P8-203ENST00000443049 980 ntBASIC19.22■□□□□ 0.67
FOXC1Q12948 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.22■□□□□ 0.67
FOXC1Q12948 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXC1Q12948 AL691432.3-201ENST00000621860 400 ntBASIC19.22■□□□□ 0.67
FOXC1Q12948 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.22■□□□□ 0.67
FOXC1Q12948 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXC1Q12948 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXC1Q12948 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXC1Q12948 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXC1Q12948 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXC1Q12948 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.22■□□□□ 0.67
FOXC1Q12948 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXC1Q12948 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXC1Q12948 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXC1Q12948 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
FOXC1Q12948 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXC1Q12948 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXC1Q12948 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXC1Q12948 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXC1Q12948 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXC1Q12948 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.21■□□□□ 0.67
FOXC1Q12948 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.21■□□□□ 0.67
FOXC1Q12948 FAM207BP-201ENST00000447172 505 ntBASIC19.21■□□□□ 0.67
FOXC1Q12948 AC091390.4-202ENST00000476426 537 ntBASIC19.21■□□□□ 0.67
FOXC1Q12948 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
FOXC1Q12948 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
FOXC1Q12948 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.21■□□□□ 0.67
FOXC1Q12948 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.21■□□□□ 0.67
FOXC1Q12948 CLEC4GP1-201ENST00000596555 870 ntBASIC19.21■□□□□ 0.67
FOXC1Q12948 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.21■□□□□ 0.67
FOXC1Q12948 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.21■□□□□ 0.67
FOXC1Q12948 AL031985.4-201ENST00000642138 673 ntBASIC19.21■□□□□ 0.67
FOXC1Q12948 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXC1Q12948 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.21■□□□□ 0.67
FOXC1Q12948 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
FOXC1Q12948 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXC1Q12948 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXC1Q12948 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXC1Q12948 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms