Protein–RNA interactions for Protein: P53599

SSK2, MAP kinase kinase kinase SSK2, yeast

Predictions only

Length 1,579 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SSK2	P53599	YDR034C-C	YDR034C-C	1317 nt		-0.62	□□□□□ -2.51
SSK2	P53599	SPO74	YGL170C	1242 nt		-0.62	□□□□□ -2.51
SSK2	P53599	YGR064W	YGR064W	369 nt		-0.62	□□□□□ -2.51
SSK2	P53599	YNL143C	YNL143C	393 nt		-0.62	□□□□□ -2.51
SSK2	P53599	YPD1	YDL235C	504 nt		-0.63	□□□□□ -2.51
SSK2	P53599	CIN2	YPL241C	807 nt		-0.63	□□□□□ -2.51
SSK2	P53599	SMD1	YGR074W	441 nt		-0.64	□□□□□ -2.51
SSK2	P53599	TIM13	YGR181W	318 nt		-0.64	□□□□□ -2.51
SSK2	P53599	ASE1	YOR058C	2658 nt		-0.64	□□□□□ -2.51
SSK2	P53599	YGL138C	YGL138C	1038 nt		-0.65	□□□□□ -2.51
SSK2	P53599	tT(UGU)G1	tT(UGU)G1	72 nt		-0.65	□□□□□ -2.51
SSK2	P53599	tT(UGU)G2	tT(UGU)G2	72 nt		-0.65	□□□□□ -2.51
SSK2	P53599	tT(UGU)P	tT(UGU)P	72 nt		-0.65	□□□□□ -2.51
SSK2	P53599	PET111	YMR257C	2403 nt		-0.65	□□□□□ -2.51
SSK2	P53599	VPS52	YDR484W	1926 nt		-0.66	□□□□□ -2.52
SSK2	P53599	YCR022C	YCR022C	345 nt		-0.66	□□□□□ -2.52
SSK2	P53599	YEL073C	YEL073C	324 nt		-0.66	□□□□□ -2.52
SSK2	P53599	YAL064W	YAL064W	285 nt		-0.66	□□□□□ -2.52
SSK2	P53599	YLR101C	YLR101C	396 nt		-0.66	□□□□□ -2.52
SSK2	P53599	snR84	snR84	550 nt		-0.67	□□□□□ -2.52
SSK2	P53599	BIG1	YHR101C	1008 nt		-0.67	□□□□□ -2.52
SSK2	P53599	PDE2	YOR360C	1581 nt		-0.67	□□□□□ -2.52
SSK2	P53599	snR8	snR8	190 nt		-0.68	□□□□□ -2.52
SSK2	P53599	YOR169C	YOR169C	465 nt		-0.68	□□□□□ -2.52
SSK2	P53599	YBR201C-A	YBR201C-A	204 nt		-0.68	□□□□□ -2.52
SSK2	P53599	YDR509W	YDR509W	348 nt		-0.69	□□□□□ -2.52
SSK2	P53599	ISD11	YER048W-A	285 nt		-0.69	□□□□□ -2.52
SSK2	P53599	VMA21	YGR105W	234 nt		-0.69	□□□□□ -2.52
SSK2	P53599	YHR212C	YHR212C	336 nt		-0.69	□□□□□ -2.52
SSK2	P53599	MCM10	YIL150C	1716 nt		-0.69	□□□□□ -2.52
SSK2	P53599	YAR060C	YAR060C	336 nt		-0.69	□□□□□ -2.52
SSK2	P53599	YFR010W-A	YFR010W-A	189 nt		-0.7	□□□□□ -2.52
SSK2	P53599	YJL127W-A	YJL127W-A	117 nt		-0.7	□□□□□ -2.52
SSK2	P53599	COX5B	YIL111W	456 nt		-0.71	□□□□□ -2.52
SSK2	P53599	YOR282W	YOR282W	321 nt		-0.71	□□□□□ -2.52
SSK2	P53599	YBR221W-A	YBR221W-A	105 nt		-0.71	□□□□□ -2.52
SSK2	P53599	NPR2	YEL062W	1848 nt		-0.71	□□□□□ -2.52
SSK2	P53599	RCO1	YMR075W	2055 nt		-0.72	□□□□□ -2.52
SSK2	P53599	TAN1	YGL232W	870 nt		-0.72	□□□□□ -2.52
SSK2	P53599	YJR011C	YJR011C	786 nt		-0.72	□□□□□ -2.52
SSK2	P53599	BFR2	YDR299W	1605 nt		-0.72	□□□□□ -2.53
SSK2	P53599	ARL3	YPL051W	597 nt		-0.73	□□□□□ -2.53
SSK2	P53599	YFL002W-B	YFL002W-B	1317 nt		-0.73	□□□□□ -2.53
SSK2	P53599	YGR161W-A	YGR161W-A	1317 nt		-0.73	□□□□□ -2.53
SSK2	P53599	YLR410W-A	YLR410W-A	1317 nt		-0.73	□□□□□ -2.53
SSK2	P53599	YCL020W	YCL020W	1317 nt		-0.73	□□□□□ -2.53
SSK2	P53599	SPO77	YLR341W	1434 nt		-0.74	□□□□□ -2.53
SSK2	P53599	YNL144W-A	YNL144W-A	84 nt		-0.74	□□□□□ -2.53
SSK2	P53599	TCA17	YEL048C	459 nt		-0.75	□□□□□ -2.53
SSK2	P53599	YHR145C	YHR145C	357 nt		-0.75	□□□□□ -2.53
SSK2	P53599	ECM11	YDR446W	909 nt		-0.76	□□□□□ -2.53
SSK2	P53599	BFR1	YOR198C	1413 nt		-0.77	□□□□□ -2.53
SSK2	P53599	SCW11	YGL028C	1629 nt		-0.77	□□□□□ -2.53
SSK2	P53599	YBR223W-A	YBR223W-A	120 nt		-0.77	□□□□□ -2.53
SSK2	P53599	OCA6	YDR067C	675 nt		-0.78	□□□□□ -2.53
SSK2	P53599	YOR186C-A	YOR186C-A	210 nt		-0.78	□□□□□ -2.53
SSK2	P53599	YOP1	YPR028W	543 nt		-0.78	□□□□□ -2.53
SSK2	P53599	DSE1	YER124C	1722 nt		-0.78	□□□□□ -2.53
SSK2	P53599	COG7	YGL005C	840 nt		-0.79	□□□□□ -2.54
SSK2	P53599	HOT13	YKL084W	351 nt		-0.79	□□□□□ -2.54
SSK2	P53599	RAD10	YML095C	633 nt		-0.79	□□□□□ -2.54
SSK2	P53599	RRG1	YDR065W	1098 nt		-0.79	□□□□□ -2.54
SSK2	P53599	YBL029W	YBL029W	1131 nt		-0.79	□□□□□ -2.54
SSK2	P53599	NOP12	YOL041C	1380 nt		-0.8	□□□□□ -2.54
SSK2	P53599	STO1	YMR125W	2586 nt		-0.8	□□□□□ -2.54
SSK2	P53599	UPF3	YGR072W	1164 nt		-0.8	□□□□□ -2.54
SSK2	P53599	YBL068W-A	YBL068W-A	237 nt		-0.8	□□□□□ -2.54
SSK2	P53599	RRT16	YNL105W	429 nt		-0.8	□□□□□ -2.54
SSK2	P53599	YOR105W	YOR105W	327 nt		-0.8	□□□□□ -2.54
SSK2	P53599	SOV1	YMR066W	2697 nt		-0.81	□□□□□ -2.54
SSK2	P53599	COG6	YNL041C	2520 nt		-0.82	□□□□□ -2.54
SSK2	P53599	YJR141W	YJR141W	1044 nt		-0.82	□□□□□ -2.54
SSK2	P53599	YGR114C	YGR114C	390 nt		-0.83	□□□□□ -2.54
SSK2	P53599	NFU1	YKL040C	771 nt		-0.83	□□□□□ -2.54
SSK2	P53599	YCR043C	YCR043C	384 nt		-0.83	□□□□□ -2.54
SSK2	P53599	YGR042W	YGR042W	816 nt		-0.83	□□□□□ -2.54
SSK2	P53599	YDL025W-A	YDL025W-A	105 nt		-0.84	□□□□□ -2.54
SSK2	P53599	YDR114C	YDR114C	303 nt		-0.84	□□□□□ -2.54
SSK2	P53599	RPC25	YKL144C	639 nt		-0.85	□□□□□ -2.55
SSK2	P53599	RPS7B	YNL096C	573 nt		-0.85	□□□□□ -2.55
SSK2	P53599	DPB11	YJL090C	2295 nt		-0.86	□□□□□ -2.55
SSK2	P53599	RMD5	YDR255C	1266 nt		-0.86	□□□□□ -2.55
SSK2	P53599	PFK27	YOL136C	1194 nt		-0.86	□□□□□ -2.55
SSK2	P53599	MIX23	YBL107C	591 nt		-0.87	□□□□□ -2.55
SSK2	P53599	snR161	snR161	161 nt		-0.87	□□□□□ -2.55
SSK2	P53599	snR36	snR36	182 nt		-0.87	□□□□□ -2.55
SSK2	P53599	YBR224W	YBR224W	516 nt		-0.87	□□□□□ -2.55
SSK2	P53599	YNL150W	YNL150W	408 nt		-0.87	□□□□□ -2.55
SSK2	P53599	PMP1	YCR024C-A	123 nt		-0.88	□□□□□ -2.55
SSK2	P53599	DAD1	YDR016C	285 nt		-0.88	□□□□□ -2.55
SSK2	P53599	snR128	snR128	126 nt		-0.88	□□□□□ -2.55
SSK2	P53599	TIM10	YHR005C-A	282 nt		-0.89	□□□□□ -2.55
SSK2	P53599	IZH4	YOL101C	939 nt		-0.89	□□□□□ -2.55
SSK2	P53599	VPS28	YPL065W	729 nt		-0.89	□□□□□ -2.55
SSK2	P53599	MUM2	YBR057C	1101 nt		-0.89	□□□□□ -2.55
SSK2	P53599	snR33	snR33	183 nt		-0.89	□□□□□ -2.55
SSK2	P53599	ECM25	YJL201W	1800 nt		-0.9	□□□□□ -2.55
SSK2	P53599	YMR173W-A	YMR173W-A	1185 nt		-0.91	□□□□□ -2.55
SSK2	P53599	DDR48	YMR173W	1293 nt		-0.91	□□□□□ -2.55
SSK2	P53599	FIG1	YBR040W	897 nt		-0.91	□□□□□ -2.55

Retrieved 100 of 7,029 protein–RNA pairs in 22.1 ms