Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CR1P49238 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CR1P49238 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CR1P49238 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CR1P49238 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.74■□□□□ 0.43
CX3CR1P49238 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CR1P49238 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.74■□□□□ 0.43
CX3CR1P49238 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CR1P49238 STX7-201ENST00000367937 1090 ntTSL 5 BASIC17.74■□□□□ 0.43
CX3CR1P49238 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.74■□□□□ 0.43
CX3CR1P49238 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.74■□□□□ 0.43
CX3CR1P49238 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CX3CR1P49238 TERF1P5-201ENST00000477545 1207 ntBASIC17.74■□□□□ 0.43
CX3CR1P49238 AC137761.2-201ENST00000561729 223 ntBASIC17.74■□□□□ 0.43
CX3CR1P49238 AC145350.3-201ENST00000569033 163 ntBASIC17.74■□□□□ 0.43
CX3CR1P49238 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CR1P49238 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.74■□□□□ 0.43
CX3CR1P49238 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC17.74■□□□□ 0.43
CX3CR1P49238 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.74■□□□□ 0.43
CX3CR1P49238 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CX3CR1P49238 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CX3CR1P49238 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CR1P49238 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CR1P49238 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CR1P49238 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CR1P49238 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CX3CR1P49238 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CR1P49238 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
CX3CR1P49238 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CX3CR1P49238 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.74■□□□□ 0.43
CX3CR1P49238 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CX3CR1P49238 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CR1P49238 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CR1P49238 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CR1P49238 KRT8P36-201ENST00000489121 1440 ntBASIC17.73■□□□□ 0.43
CX3CR1P49238 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CR1P49238 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CX3CR1P49238 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CR1P49238 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CX3CR1P49238 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CR1P49238 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.73■□□□□ 0.43
CX3CR1P49238 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CR1P49238 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC17.73■□□□□ 0.43
CX3CR1P49238 KRT18P11-201ENST00000435214 1283 ntBASIC17.73■□□□□ 0.43
CX3CR1P49238 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC17.73■□□□□ 0.43
CX3CR1P49238 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
CX3CR1P49238 SPI1-203ENST00000533030 661 ntTSL 2 BASIC17.73■□□□□ 0.43
CX3CR1P49238 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CX3CR1P49238 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC17.73■□□□□ 0.43
CX3CR1P49238 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CX3CR1P49238 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.73■□□□□ 0.43
CX3CR1P49238 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CR1P49238 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CR1P49238 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.73■□□□□ 0.43
CX3CR1P49238 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CR1P49238 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CX3CR1P49238 SMG8-203ENST00000578922 2178 ntBASIC17.73■□□□□ 0.43
CX3CR1P49238 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
CX3CR1P49238 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.73■□□□□ 0.43
CX3CR1P49238 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CX3CR1P49238 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CR1P49238 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.72■□□□□ 0.43
CX3CR1P49238 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CR1P49238 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.72■□□□□ 0.43
CX3CR1P49238 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CR1P49238 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CX3CR1P49238 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CR1P49238 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CR1P49238 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.72■□□□□ 0.43
CX3CR1P49238 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CR1P49238 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
CX3CR1P49238 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.72■□□□□ 0.43
CX3CR1P49238 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CR1P49238 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CR1P49238 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CR1P49238 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CR1P49238 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CR1P49238 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
CX3CR1P49238 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.72■□□□□ 0.43
CX3CR1P49238 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CX3CR1P49238 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.72■□□□□ 0.43
CX3CR1P49238 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CX3CR1P49238 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CX3CR1P49238 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.71■□□□□ 0.43
CX3CR1P49238 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CX3CR1P49238 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.71■□□□□ 0.43
CX3CR1P49238 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CX3CR1P49238 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CX3CR1P49238 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CX3CR1P49238 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CX3CR1P49238 KRT18P5-201ENST00000436075 1291 ntBASIC17.71■□□□□ 0.43
CX3CR1P49238 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC17.71■□□□□ 0.43
CX3CR1P49238 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC17.71■□□□□ 0.43
CX3CR1P49238 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC17.71■□□□□ 0.43
CX3CR1P49238 AL591742.1-201ENST00000604433 565 ntBASIC17.71■□□□□ 0.43
CX3CR1P49238 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CX3CR1P49238 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CX3CR1P49238 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CX3CR1P49238 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CR1P49238 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms