Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL5A1P20908 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.56■□□□□ 0.72
COL5A1P20908 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
COL5A1P20908 KRT18P35-201ENST00000510488 1269 ntBASIC19.56■□□□□ 0.72
COL5A1P20908 AC145285.6-201ENST00000604632 637 ntBASIC19.56■□□□□ 0.72
COL5A1P20908 REXO1L10P-201ENST00000615707 1290 ntBASIC19.56■□□□□ 0.72
COL5A1P20908 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
COL5A1P20908 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.56■□□□□ 0.72
COL5A1P20908 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
COL5A1P20908 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A1P20908 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.56■□□□□ 0.72
COL5A1P20908 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.56■□□□□ 0.72
COL5A1P20908 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A1P20908 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A1P20908 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.56■□□□□ 0.72
COL5A1P20908 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A1P20908 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A1P20908 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A1P20908 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A1P20908 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A1P20908 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.56■□□□□ 0.72
COL5A1P20908 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A1P20908 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL5A1P20908 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.56■□□□□ 0.72
COL5A1P20908 MMP23A-201ENST00000234610 1017 ntBASIC19.55■□□□□ 0.72
COL5A1P20908 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A1P20908 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A1P20908 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.55■□□□□ 0.72
COL5A1P20908 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.55■□□□□ 0.72
COL5A1P20908 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.55■□□□□ 0.72
COL5A1P20908 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A1P20908 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.55■□□□□ 0.72
COL5A1P20908 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.55■□□□□ 0.72
COL5A1P20908 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.55■□□□□ 0.72
COL5A1P20908 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A1P20908 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
COL5A1P20908 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A1P20908 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A1P20908 AC079834.2-201ENST00000609776 1949 ntBASIC19.55■□□□□ 0.72
COL5A1P20908 HTR7P1-201ENST00000538670 1336 ntBASIC19.55■□□□□ 0.72
COL5A1P20908 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A1P20908 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A1P20908 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A1P20908 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
COL5A1P20908 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A1P20908 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
COL5A1P20908 AL355355.2-201ENST00000442321 338 ntBASIC19.55■□□□□ 0.72
COL5A1P20908 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A1P20908 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.55■□□□□ 0.72
COL5A1P20908 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL5A1P20908 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.54■□□□□ 0.72
COL5A1P20908 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
COL5A1P20908 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A1P20908 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.54■□□□□ 0.72
COL5A1P20908 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A1P20908 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A1P20908 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.54■□□□□ 0.72
COL5A1P20908 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A1P20908 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A1P20908 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A1P20908 MIR2861-201ENST00000636310 90 ntBASIC19.54■□□□□ 0.72
COL5A1P20908 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A1P20908 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A1P20908 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A1P20908 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL5A1P20908 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.54■□□□□ 0.72
COL5A1P20908 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A1P20908 UNC93B2-201ENST00000285383 730 ntBASIC19.53■□□□□ 0.72
COL5A1P20908 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A1P20908 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A1P20908 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
COL5A1P20908 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A1P20908 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A1P20908 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A1P20908 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.53■□□□□ 0.72
COL5A1P20908 KRT8P9-201ENST00000558927 1449 ntBASIC19.53■□□□□ 0.72
COL5A1P20908 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A1P20908 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A1P20908 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
COL5A1P20908 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
COL5A1P20908 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A1P20908 RBM17P1-201ENST00000453646 1190 ntBASIC19.53■□□□□ 0.72
COL5A1P20908 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
COL5A1P20908 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.53■□□□□ 0.72
COL5A1P20908 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A1P20908 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.53■□□□□ 0.72
COL5A1P20908 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL5A1P20908 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL5A1P20908 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL5A1P20908 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL5A1P20908 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL5A1P20908 AC113347.1-201ENST00000413321 391 ntBASIC19.52■□□□□ 0.72
COL5A1P20908 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.52■□□□□ 0.72
COL5A1P20908 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.52■□□□□ 0.72
COL5A1P20908 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.52■□□□□ 0.72
COL5A1P20908 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.52■□□□□ 0.72
COL5A1P20908 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.52■□□□□ 0.72
COL5A1P20908 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL5A1P20908 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
COL5A1P20908 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms