Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC22.21■■□□□ 1.15
TPM1P09493 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TPM1P09493 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
TPM1P09493 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TPM1P09493 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
TPM1P09493 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC22.21■■□□□ 1.15
TPM1P09493 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.15
TPM1P09493 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.15
TPM1P09493 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
TPM1P09493 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC22.2■■□□□ 1.14
TPM1P09493 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TPM1P09493 EBPL-204ENST00000378272 766 ntTSL 3 BASIC22.2■■□□□ 1.14
TPM1P09493 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TPM1P09493 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TPM1P09493 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TPM1P09493 AP001330.3-201ENST00000520123 633 ntBASIC22.2■■□□□ 1.14
TPM1P09493 RARRES2P11-201ENST00000635158 484 ntBASIC22.2■■□□□ 1.14
TPM1P09493 MIR2861-201ENST00000636310 90 ntBASIC22.2■■□□□ 1.14
TPM1P09493 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TPM1P09493 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
TPM1P09493 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TPM1P09493 KRT87P-202ENST00000534226 1464 ntBASIC22.2■■□□□ 1.14
TPM1P09493 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
TPM1P09493 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC22.2■■□□□ 1.14
TPM1P09493 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
TPM1P09493 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TPM1P09493 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
TPM1P09493 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TPM1P09493 AC079140.4-201ENST00000507448 529 ntBASIC22.19■■□□□ 1.14
TPM1P09493 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.19■■□□□ 1.14
TPM1P09493 MAG-206ENST00000597035 542 ntTSL 4 BASIC22.19■■□□□ 1.14
TPM1P09493 AL354811.1-201ENST00000610286 706 ntBASIC22.19■■□□□ 1.14
TPM1P09493 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.19■■□□□ 1.14
TPM1P09493 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TPM1P09493 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TPM1P09493 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC22.19■■□□□ 1.14
TPM1P09493 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TPM1P09493 AC116050.2-201ENST00000612102 1779 ntBASIC22.19■■□□□ 1.14
TPM1P09493 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TPM1P09493 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TPM1P09493 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC22.19■■□□□ 1.14
TPM1P09493 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC22.19■■□□□ 1.14
TPM1P09493 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TPM1P09493 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
TPM1P09493 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
TPM1P09493 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
TPM1P09493 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TPM1P09493 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC22.18■■□□□ 1.14
TPM1P09493 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC22.18■■□□□ 1.14
TPM1P09493 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TPM1P09493 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
TPM1P09493 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
TPM1P09493 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22.18■■□□□ 1.14
TPM1P09493 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC22.18■■□□□ 1.14
TPM1P09493 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TPM1P09493 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
TPM1P09493 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TPM1P09493 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
TPM1P09493 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC22.18■■□□□ 1.14
TPM1P09493 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TPM1P09493 AC096631.2-201ENST00000436136 790 ntBASIC22.18■■□□□ 1.14
TPM1P09493 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC22.18■■□□□ 1.14
TPM1P09493 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC22.18■■□□□ 1.14
TPM1P09493 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.18■■□□□ 1.14
TPM1P09493 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC22.18■■□□□ 1.14
TPM1P09493 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TPM1P09493 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
TPM1P09493 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TPM1P09493 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC22.18■■□□□ 1.14
TPM1P09493 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC22.18■■□□□ 1.14
TPM1P09493 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TPM1P09493 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
TPM1P09493 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
TPM1P09493 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC22.17■■□□□ 1.14
TPM1P09493 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
TPM1P09493 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC22.17■■□□□ 1.14
TPM1P09493 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
TPM1P09493 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC22.17■■□□□ 1.14
TPM1P09493 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TPM1P09493 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
TPM1P09493 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TPM1P09493 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC22.17■■□□□ 1.14
TPM1P09493 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TPM1P09493 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
TPM1P09493 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC22.17■■□□□ 1.14
TPM1P09493 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC22.17■■□□□ 1.14
TPM1P09493 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC22.17■■□□□ 1.14
TPM1P09493 AC106739.1-201ENST00000617035 715 ntBASIC22.17■■□□□ 1.14
TPM1P09493 AL355001.2-201ENST00000620617 1191 ntBASIC22.17■■□□□ 1.14
TPM1P09493 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC22.17■■□□□ 1.14
TPM1P09493 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TPM1P09493 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TPM1P09493 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC22.17■■□□□ 1.14
TPM1P09493 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TPM1P09493 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TPM1P09493 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
TPM1P09493 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC22.17■■□□□ 1.14
TPM1P09493 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
TPM1P09493 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC22.16■■□□□ 1.14
TPM1P09493 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms