Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC26.89■■□□□ 1.9
COL3A1P02461 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC26.89■■□□□ 1.9
COL3A1P02461 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
COL3A1P02461 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC26.89■■□□□ 1.89
COL3A1P02461 AC124283.5-201ENST00000624661 1809 ntBASIC26.89■■□□□ 1.89
COL3A1P02461 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC26.88■■□□□ 1.89
COL3A1P02461 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC26.88■■□□□ 1.89
COL3A1P02461 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC26.88■■□□□ 1.89
COL3A1P02461 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL3A1P02461 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
COL3A1P02461 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC26.88■■□□□ 1.89
COL3A1P02461 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC26.88■■□□□ 1.89
COL3A1P02461 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
COL3A1P02461 AL031963.3-201ENST00000606441 850 ntBASIC26.88■■□□□ 1.89
COL3A1P02461 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC26.88■■□□□ 1.89
COL3A1P02461 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC26.88■■□□□ 1.89
COL3A1P02461 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL3A1P02461 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL3A1P02461 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL3A1P02461 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC26.88■■□□□ 1.89
COL3A1P02461 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL3A1P02461 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL3A1P02461 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
COL3A1P02461 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
COL3A1P02461 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
COL3A1P02461 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
COL3A1P02461 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
COL3A1P02461 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL3A1P02461 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
COL3A1P02461 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
COL3A1P02461 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC26.87■■□□□ 1.89
COL3A1P02461 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
COL3A1P02461 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL3A1P02461 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL3A1P02461 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
COL3A1P02461 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC26.87■■□□□ 1.89
COL3A1P02461 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
COL3A1P02461 SERF2-207ENST00000409614 582 ntTSL 2 BASIC26.87■■□□□ 1.89
COL3A1P02461 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC26.87■■□□□ 1.89
COL3A1P02461 DPP3P2-201ENST00000416030 1696 ntBASIC26.87■■□□□ 1.89
COL3A1P02461 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
COL3A1P02461 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC26.86■■□□□ 1.89
COL3A1P02461 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
COL3A1P02461 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC26.86■■□□□ 1.89
COL3A1P02461 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
COL3A1P02461 RNF121-214ENST00000533380 870 ntTSL 3 BASIC26.86■■□□□ 1.89
COL3A1P02461 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
COL3A1P02461 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC26.86■■□□□ 1.89
COL3A1P02461 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
COL3A1P02461 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC26.85■■□□□ 1.89
COL3A1P02461 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC26.85■■□□□ 1.89
COL3A1P02461 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
COL3A1P02461 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC26.85■■□□□ 1.89
COL3A1P02461 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
COL3A1P02461 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL3A1P02461 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC26.85■■□□□ 1.89
COL3A1P02461 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC26.85■■□□□ 1.89
COL3A1P02461 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC26.85■■□□□ 1.89
COL3A1P02461 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC26.85■■□□□ 1.89
COL3A1P02461 AL359736.2-201ENST00000621992 437 ntBASIC26.85■■□□□ 1.89
COL3A1P02461 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL3A1P02461 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
COL3A1P02461 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
COL3A1P02461 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC26.84■■□□□ 1.89
COL3A1P02461 AP005212.1-201ENST00000581547 1997 ntBASIC26.84■■□□□ 1.89
COL3A1P02461 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC26.84■■□□□ 1.89
COL3A1P02461 MTDHP1-201ENST00000605323 784 ntBASIC26.84■■□□□ 1.89
COL3A1P02461 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
COL3A1P02461 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
COL3A1P02461 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC26.84■■□□□ 1.89
COL3A1P02461 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
COL3A1P02461 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC26.84■■□□□ 1.89
COL3A1P02461 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC26.83■■□□□ 1.89
COL3A1P02461 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
COL3A1P02461 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC26.83■■□□□ 1.89
COL3A1P02461 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC26.83■■□□□ 1.89
COL3A1P02461 AC092720.2-201ENST00000602388 1665 ntBASIC26.83■■□□□ 1.89
COL3A1P02461 AC073314.1-201ENST00000568729 2216 ntBASIC26.83■■□□□ 1.89
COL3A1P02461 ABHD17AP6-201ENST00000458502 1044 ntBASIC26.83■■□□□ 1.89
COL3A1P02461 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
COL3A1P02461 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC26.83■■□□□ 1.89
COL3A1P02461 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC26.83■■□□□ 1.89
COL3A1P02461 AC120498.8-201ENST00000614275 531 ntBASIC26.83■■□□□ 1.89
COL3A1P02461 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
COL3A1P02461 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
COL3A1P02461 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC26.82■■□□□ 1.88
COL3A1P02461 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC26.82■■□□□ 1.88
COL3A1P02461 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC26.82■■□□□ 1.88
COL3A1P02461 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC26.82■■□□□ 1.88
COL3A1P02461 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
COL3A1P02461 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
COL3A1P02461 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC26.82■■□□□ 1.88
COL3A1P02461 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC26.82■■□□□ 1.88
COL3A1P02461 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
COL3A1P02461 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
COL3A1P02461 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
COL3A1P02461 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
COL3A1P02461 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
COL3A1P02461 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC26.81■■□□□ 1.88
COL3A1P02461 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC26.81■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms