Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.46■□□□□ 0.71
LDLRP01130 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
LDLRP01130 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.46■□□□□ 0.71
LDLRP01130 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.46■□□□□ 0.71
LDLRP01130 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.46■□□□□ 0.71
LDLRP01130 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.46■□□□□ 0.71
LDLRP01130 AC112907.3-201ENST00000577781 2400 ntBASIC19.46■□□□□ 0.71
LDLRP01130 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
LDLRP01130 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
LDLRP01130 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.46■□□□□ 0.71
LDLRP01130 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.45■□□□□ 0.7
LDLRP01130 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
LDLRP01130 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDLRP01130 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.45■□□□□ 0.7
LDLRP01130 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LDLRP01130 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDLRP01130 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LDLRP01130 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LDLRP01130 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LDLRP01130 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LDLRP01130 AC079140.4-201ENST00000507448 529 ntBASIC19.45■□□□□ 0.7
LDLRP01130 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.45■□□□□ 0.7
LDLRP01130 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.45■□□□□ 0.7
LDLRP01130 AC005181.1-201ENST00000604782 1256 ntBASIC19.45■□□□□ 0.7
LDLRP01130 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.45■□□□□ 0.7
LDLRP01130 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
LDLRP01130 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDLRP01130 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LDLRP01130 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.45■□□□□ 0.7
LDLRP01130 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.44■□□□□ 0.7
LDLRP01130 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.44■□□□□ 0.7
LDLRP01130 AL162377.1-201ENST00000618844 1793 ntBASIC19.44■□□□□ 0.7
LDLRP01130 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.44■□□□□ 0.7
LDLRP01130 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LDLRP01130 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LDLRP01130 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LDLRP01130 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.44■□□□□ 0.7
LDLRP01130 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LDLRP01130 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.44■□□□□ 0.7
LDLRP01130 AC087289.5-201ENST00000586076 3175 ntBASIC19.44■□□□□ 0.7
LDLRP01130 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LDLRP01130 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LDLRP01130 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LDLRP01130 AC007322.1-201ENST00000426983 750 ntBASIC19.44■□□□□ 0.7
LDLRP01130 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.44■□□□□ 0.7
LDLRP01130 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.44■□□□□ 0.7
LDLRP01130 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.44■□□□□ 0.7
LDLRP01130 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.44■□□□□ 0.7
LDLRP01130 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.44■□□□□ 0.7
LDLRP01130 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.44■□□□□ 0.7
LDLRP01130 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LDLRP01130 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
LDLRP01130 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LDLRP01130 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
LDLRP01130 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 AL512408.1-201ENST00000569378 2000 ntBASIC19.43■□□□□ 0.7
LDLRP01130 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.43■□□□□ 0.7
LDLRP01130 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
LDLRP01130 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LDLRP01130 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.43■□□□□ 0.7
LDLRP01130 DUX4L16-201ENST00000555130 1264 ntBASIC19.43■□□□□ 0.7
LDLRP01130 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.43■□□□□ 0.7
LDLRP01130 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.43■□□□□ 0.7
LDLRP01130 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.43■□□□□ 0.7
LDLRP01130 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.43■□□□□ 0.7
LDLRP01130 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.43■□□□□ 0.7
LDLRP01130 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.43■□□□□ 0.7
LDLRP01130 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.43■□□□□ 0.7
LDLRP01130 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.43■□□□□ 0.7
LDLRP01130 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
LDLRP01130 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
LDLRP01130 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.43■□□□□ 0.7
LDLRP01130 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.43■□□□□ 0.7
LDLRP01130 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LDLRP01130 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms