Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 KRT87P-202ENST00000534226 1464 ntBASIC19.78■□□□□ 0.76
VPS4BO75351 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS4BO75351 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4BO75351 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4BO75351 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4BO75351 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4BO75351 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4BO75351 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS4BO75351 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4BO75351 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4BO75351 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4BO75351 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.77■□□□□ 0.76
VPS4BO75351 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
VPS4BO75351 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
VPS4BO75351 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4BO75351 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4BO75351 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4BO75351 AFG3L1P-217ENST00000557444 2447 ntBASIC19.76■□□□□ 0.75
VPS4BO75351 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.76■□□□□ 0.75
VPS4BO75351 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4BO75351 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
VPS4BO75351 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4BO75351 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4BO75351 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4BO75351 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4BO75351 AC007322.1-201ENST00000426983 750 ntBASIC19.76■□□□□ 0.75
VPS4BO75351 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.76■□□□□ 0.75
VPS4BO75351 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS4BO75351 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4BO75351 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS4BO75351 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS4BO75351 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4BO75351 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4BO75351 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS4BO75351 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS4BO75351 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4BO75351 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
VPS4BO75351 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
VPS4BO75351 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS4BO75351 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS4BO75351 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS4BO75351 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS4BO75351 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4BO75351 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
VPS4BO75351 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4BO75351 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4BO75351 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS4BO75351 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS4BO75351 AC138907.5-202ENST00000569484 235 ntBASIC19.75■□□□□ 0.75
VPS4BO75351 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.75■□□□□ 0.75
VPS4BO75351 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4BO75351 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4BO75351 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
VPS4BO75351 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
VPS4BO75351 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS4BO75351 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS4BO75351 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4BO75351 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4BO75351 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4BO75351 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
VPS4BO75351 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4BO75351 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4BO75351 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS4BO75351 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.74■□□□□ 0.75
VPS4BO75351 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4BO75351 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.74■□□□□ 0.75
VPS4BO75351 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS4BO75351 MFSD11-216ENST00000590393 1141 ntBASIC19.74■□□□□ 0.75
VPS4BO75351 AC005181.1-201ENST00000604782 1256 ntBASIC19.74■□□□□ 0.75
VPS4BO75351 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS4BO75351 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4BO75351 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS4BO75351 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
VPS4BO75351 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4BO75351 AC007952.6-201ENST00000573168 2673 ntBASIC19.74■□□□□ 0.75
VPS4BO75351 AC003957.1-201ENST00000625108 2673 ntBASIC19.74■□□□□ 0.75
VPS4BO75351 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4BO75351 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4BO75351 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4BO75351 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4BO75351 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4BO75351 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS4BO75351 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4BO75351 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4BO75351 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
VPS4BO75351 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4BO75351 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
VPS4BO75351 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS4BO75351 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
VPS4BO75351 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4BO75351 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
VPS4BO75351 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4BO75351 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
VPS4BO75351 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms