Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CPSF4LA6NMK7 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 KRT8P36-201ENST00000489121 1440 ntBASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.62■□□□□ 0.57
CPSF4LA6NMK7 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 DPP3P2-201ENST00000416030 1696 ntBASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 CDV3P1-201ENST00000471403 739 ntBASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CPSF4LA6NMK7 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 FAM21FP-204ENST00000608637 956 ntBASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 MYCNOS-205ENST00000641950 531 ntBASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CPSF4LA6NMK7 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CPSF4LA6NMK7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.58■□□□□ 0.57
CPSF4LA6NMK7 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CPSF4LA6NMK7 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CPSF4LA6NMK7 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
CPSF4LA6NMK7 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.58■□□□□ 0.57
CPSF4LA6NMK7 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CPSF4LA6NMK7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.58■□□□□ 0.57
CPSF4LA6NMK7 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.58■□□□□ 0.56
CPSF4LA6NMK7 NTF6G-201ENST00000591094 616 ntBASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms