Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMIM28A0A1B0GU29 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMIM28A0A1B0GU29 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMIM28A0A1B0GU29 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SMIM28A0A1B0GU29 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
SMIM28A0A1B0GU29 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.76■■□□□ 1.07
SMIM28A0A1B0GU29 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMIM28A0A1B0GU29 AL359736.2-201ENST00000621992 437 ntBASIC21.76■■□□□ 1.07
SMIM28A0A1B0GU29 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMIM28A0A1B0GU29 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SMIM28A0A1B0GU29 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
SMIM28A0A1B0GU29 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 RPPH1-201ENST00000516869 333 ntBASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMIM28A0A1B0GU29 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMIM28A0A1B0GU29 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.74■■□□□ 1.07
SMIM28A0A1B0GU29 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.74■■□□□ 1.07
SMIM28A0A1B0GU29 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.74■■□□□ 1.07
SMIM28A0A1B0GU29 PTBP1P-201ENST00000554374 1601 ntBASIC21.74■■□□□ 1.07
SMIM28A0A1B0GU29 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMIM28A0A1B0GU29 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMIM28A0A1B0GU29 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
SMIM28A0A1B0GU29 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
SMIM28A0A1B0GU29 C1QBPP2-201ENST00000528754 825 ntBASIC21.74■■□□□ 1.07
SMIM28A0A1B0GU29 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMIM28A0A1B0GU29 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 AC093827.2-201ENST00000512654 315 ntBASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SMIM28A0A1B0GU29 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 MTDHP1-201ENST00000605323 784 ntBASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMIM28A0A1B0GU29 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMIM28A0A1B0GU29 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
SMIM28A0A1B0GU29 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMIM28A0A1B0GU29 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMIM28A0A1B0GU29 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms