Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 ME2-218ENST00000640965 2476 ntTSL 5 BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 AC211429.1-201ENST00000415277 523 ntBASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 AC092118.2-201ENST00000613495 667 ntBASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 AC116050.2-201ENST00000612102 1779 ntBASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC27.21■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC27.2■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC27.2■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC27.2■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC27.2■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 LINC01521-201ENST00000504184 1943 ntBASIC27.2■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 METTL15-202ENST00000403099 795 ntTSL 5 BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC27.18■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 AC142381.4-202ENST00000563973 229 ntBASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 AC020907.5-201ENST00000624372 1936 ntBASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 VMO1-204ENST00000441199 741 ntTSL 2 BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SENP3-EIF4A1A0A087X0R7 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC27.16■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms