Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHB3Q9Y5E6 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
PCDHB3Q9Y5E6 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHB3Q9Y5E6 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCDHB3Q9Y5E6 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 AC098934.4-201ENST00000564127 592 ntBASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCDHB3Q9Y5E6 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 AC091799.1-201ENST00000422823 811 ntBASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
PCDHB3Q9Y5E6 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 AC010980.2-201ENST00000587099 1412 ntBASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 BX276092.2-201ENST00000417668 665 ntBASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 ITM2C-210ENST00000620962 501 ntBASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHB3Q9Y5E6 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 CDV3P1-201ENST00000471403 739 ntBASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 AC097658.1-201ENST00000475555 843 ntBASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 FAM21FP-204ENST00000608637 956 ntBASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHB3Q9Y5E6 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.77■□□□□ 0.75
PCDHB3Q9Y5E6 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHB3Q9Y5E6 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHB3Q9Y5E6 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHB3Q9Y5E6 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
PCDHB3Q9Y5E6 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.76■□□□□ 0.75
PCDHB3Q9Y5E6 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
PCDHB3Q9Y5E6 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
PCDHB3Q9Y5E6 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHB3Q9Y5E6 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.76■□□□□ 0.75
PCDHB3Q9Y5E6 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.76■□□□□ 0.75
PCDHB3Q9Y5E6 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.76■□□□□ 0.75
PCDHB3Q9Y5E6 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms