Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.19■□□□□ 0.98
LIMD1Q9UGP4 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMD1Q9UGP4 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMD1Q9UGP4 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMD1Q9UGP4 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMD1Q9UGP4 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMD1Q9UGP4 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 AP003071.4-201ENST00000562276 1284 ntBASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 AC087633.2-202ENST00000565166 1439 ntBASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMD1Q9UGP4 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.17■□□□□ 0.98
LIMD1Q9UGP4 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMD1Q9UGP4 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
LIMD1Q9UGP4 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.17■□□□□ 0.98
LIMD1Q9UGP4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
LIMD1Q9UGP4 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMD1Q9UGP4 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMD1Q9UGP4 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMD1Q9UGP4 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMD1Q9UGP4 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 MMP23A-201ENST00000234610 1017 ntBASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 AL355355.2-201ENST00000442321 338 ntBASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMD1Q9UGP4 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.15■□□□□ 0.98
LIMD1Q9UGP4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.14■□□□□ 0.98
LIMD1Q9UGP4 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.14■□□□□ 0.98
LIMD1Q9UGP4 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LIMD1Q9UGP4 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 AL049597.2-201ENST00000565575 961 ntBASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 AC080038.3-201ENST00000623346 1952 ntBASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.14■□□□□ 0.97
LIMD1Q9UGP4 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIMD1Q9UGP4 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIMD1Q9UGP4 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIMD1Q9UGP4 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms