Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
VSX1Q9NZR4 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.08■□□□□ 0.48
VSX1Q9NZR4 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.48
VSX1Q9NZR4 AL591742.1-201ENST00000604433 565 ntBASIC18.08■□□□□ 0.48
VSX1Q9NZR4 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.08■□□□□ 0.48
VSX1Q9NZR4 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
VSX1Q9NZR4 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VSX1Q9NZR4 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VSX1Q9NZR4 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
VSX1Q9NZR4 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VSX1Q9NZR4 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 AC007322.4-201ENST00000509611 723 ntBASIC18.07■□□□□ 0.48
VSX1Q9NZR4 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 AL162412.1-201ENST00000567129 965 ntBASIC18.07■□□□□ 0.48
VSX1Q9NZR4 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.07■□□□□ 0.48
VSX1Q9NZR4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 AL391422.3-201ENST00000603791 2761 ntBASIC18.06■□□□□ 0.48
VSX1Q9NZR4 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VSX1Q9NZR4 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 PGM5P4-201ENST00000421970 445 ntBASIC18.05■□□□□ 0.48
VSX1Q9NZR4 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 SMG8-203ENST00000578922 2178 ntBASIC18.05■□□□□ 0.48
VSX1Q9NZR4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
VSX1Q9NZR4 AC087633.2-202ENST00000565166 1439 ntBASIC18.05■□□□□ 0.48
VSX1Q9NZR4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 KRT18P5-201ENST00000436075 1291 ntBASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms