Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.27■□□□□ 0.84
TM9SF3Q9HD45 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TM9SF3Q9HD45 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
TM9SF3Q9HD45 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TM9SF3Q9HD45 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
TM9SF3Q9HD45 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.27■□□□□ 0.83
TM9SF3Q9HD45 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.83
TM9SF3Q9HD45 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF3Q9HD45 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 PGM5P4-201ENST00000421970 445 ntBASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 SNORA78-201ENST00000459373 127 ntBASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 AC005229.4-201ENST00000610085 2198 ntBASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF3Q9HD45 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
TM9SF3Q9HD45 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 MTDHP1-201ENST00000605323 784 ntBASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF3Q9HD45 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TM9SF3Q9HD45 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms